Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00103 ATGGGTCTTAGAGATTTGGGTGCTTCACTTCCCCCTGGCTTTCGGTTTTATCCAAGTGATGAAGAATTAGTCCTTCATTACCTTTACAAAAAGATCACAAATGAAGATGTTCTTAAGGGTACCTTGGAGGAAATTGACTTGCACACATGCGAGCCTTGGCAACTTCCTGAGGTGGCTAAGCTGAACGCAACCGAATGGTACTTTTTTAGCTTCCGTGACCGTAAATATGCCACAGGGTTTCGAACCAATAGGGCAACGACATCTGGCTATTGGAAAGCAACGGGGAAGGATCGAACGGTGTTTGATCCAATTACGCGTGAGGTTGTAGGGATGAGGAAAACGTTGGTGTTCTATAGGAATAGAGCTCCAAATGGTATAAAAACAGGTTGGATTATGCATGAGTTTCGGTTGGAGACCCCACATATGCCACCTAAGGAGGATTGGGTTTTGTGTAGAGTATTTTACAAAGGAAAAACAGACAACAGTGCCAAACTAAGCCCACAAGACATGTATGAGACTTTACCCCCATCCCTAACTTTGGATTCATTATCTCCAACCAACCAAATCATGCCAATTGGGTATAACCAACTTGCTTCTTTCTCCTCCTCAATGACAACCCATCATTTTCATAATCCAAATGTGAACCAAAATAATTCTTTGATGAATCTCCTTCAATTTTCTAAGGAAACAAACACAAATTGTAGTAGTGTTACTCAAATTAGTCCCAAATGTGATGATGGATATGGATTCTTGTGGGACATGGATTTGGATGGTGTGGCCTCATCAAATTTGGATGGAATGAGATTCGAGGTTGATAATAATAGCATGGTCTTGTTATAA 840 0.4107 MGLRDLGASLPPGFRFYPSDEELVLHYLYKKITNEDVLKGTLEEIDLHTCEPWQLPEVAKLNATEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRTVFDPITREVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLETPHMPPKEDWVLCRVFYKGKTDNSAKLSPQDMYETLPPSLTLDSLSPTNQIMPIGYNQLASFSSSMTTHHFHNPNVNQNNSLMNLLQFSKETNTNCSSVTQISPKCDDGYGFLWDMDLDGVASSNLDGMRFEVDNNSMVLL 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00103 279 Pfam No apical meristem (NAM) protein 11 137 IPR003441 GO:0003677|GO:0006355
Car04g00103 279 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 274 - -
Car04g00103 279 Gene3D NAC domain 19 160 IPR036093 GO:0003677|GO:0006355
Car04g00103 279 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 274 - -
Car04g00103 279 SUPERFAMILY NAC domain 8 156 IPR036093 GO:0003677|GO:0006355
Car04g00103 279 ProSiteProfiles NAC domain profile. 10 156 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00103 Car-Chr4 1019797 1025078 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00103 9 171 NAC Transcription Factor Family AT1G76420 56.287 7.81e-63 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Car04g00103 NAM 1.9e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00103 - - ccaj:109788642 484.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g00103 04 1019797 1025078 Car04g00103 04 1019797 1025078 ECH
Car03g02335 03 69257956 69264922 Car04g00103 04 1019797 1025078 PCT