Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00098 ATGGAAGAAGAACAGGATCGAATTTTGCTTACTAGCTTAGGCGTTAAATCCGCCAATCCTGAAGACATTGAACGCCACGTTATAGAAAAGGCTAGGAATGATTCAGTGATTGTTGCTGAAGCTGAAGGGAAAACTGATGAAAAAGAATGTTCTAATTTACCTGAAATCGTTGATCCGAAGTTTAGTGTTAAAGCTGAACTTCATCAGAAGTTGAGGGCGGTAGAATTTGAAATTGGCGCTGTTTATTCCACTATTCAACAGCCAAGAGATGTTGATAAAGGTGGAGAATGCGGTGATGTTGGTGAGGAAAATTTGGAGGAAGGGATTGGTGAGGGTGATGGTTCTAATCTTCAGCGTGTTCTTGCTGCTGATAGGCTGAGAAGTCTTAAGAATACGAAGGCGCAATTGGAGAAGGAGCTTTCCAGTTTGTGTAAGGATGGTGATTCGAAAAGCGTTGAGCGTGAAAAACTTATATTTAGTTTTGTTAAGGAAGACAGAAGACCTAAGAAGAAGCTTAAAGAAGATAAGAAATTGCAGAAAAAAACTGGAAAGCGGCTTAAGAAGGTCTCGTTtgatgctgatactgattttgacgctgttctggatgctgCCTCTGCAGGCTTTGTAGAAACTGAAAGGGATGAATTGGTAAGAAAAGGAATTTTAACCCCTTTTCATAAGTTGAAAGGCTTTGAGCGCCGCATTCAACAACCTGAAGCCTCAACTAGTCATAATGCAGCTGAGCAAGAAAATACCGACGATCTTGCTTTGTCCAGTGTTGAAAGAGCTGCCAGATCATTTTCTGAGGCAGCAAAAGCTCGCCCGAGTTCTAAGCTGCTTGAGCCTGAAGAGTTGCCAAAGCTTGATGCACCCACTATTCCTTTTCGCAGGCTTAAGAAACCACTAATATTATCCAAACCTATAGACAGTGAGGTGGATCTGAATACAGGTTCAAAAAGGAAAAAGAGACGACCTTTGCCTGGTAGGAAATGGACCAAGCGTGTTTCTCGTGAGGATAGACAACTGGAAGAAAGTGAAAATGCAAATGGTGGTTTGGACACTTCCAGTTGTGAAAGTTTAGAAGTGCAAGATGTTGAACTTTCTGAACATGAGTCTTCTTATGTAACATTAGAAGGTGGGCTGAAAATCCCTGATAACATATTTGAAGCACTGTTTGACTATCAAAAGGTTGGTGTTCAATGGCTGTGGGAATTGCATTGCCAAAGAGCTGGTGGAATTATTGGTGATGAGATGGGTCTTGGTAAAACTATACAGGTATTATCATTTCTGGGTGCATTGCATTTTAGTGGCATGTACAAACCCAGCATTATTGTCTGTCCTGTTACACTCCTGCGACAGTGGAAAAGGGAAGCTAAAAAGTGGTATCCACAGTTCCACGTAGAAATTTTACACGATTCTGCACAGGATCTTGCTTCTAAAAAGAAACGAGCTGAATCCGATGGATCAGACTATGAAAGCAATAGTTCAAACGATAATGATTATGAGAGAAGTGTACCATCTAAAAACACAAGAAAATGGGAAACCCTGATAAATCGTGTCATGAGATCAGAATTTGGATTACTTATCACCACTTATGAGCAGCTAAGGATATTGGGGGACCAGCTGCTTGACATTGAATGGGGTTATGCTGTTCTTGATGAAGGGCATAAAATAAGGAATCCAAATGCTGAAATAACCCTAGCTTGCAAACAGCTACAAACTGTACACCGTATCATAATGACTGGTGCACCTATTCAGAACAAACTAAGTGAGTTATGGTCGTTGTTTGATTTTGTTTTCCCTGGAAAATTGGGTGTTTTGCCTGTATTTGAAGCTGAATTTGCAGTTCCTATAGCAGTTGGTGGATATGCAAATGCTTCTCCATTACAAGTATCCACAGCATACAGGTGTGCTGTCGTGCTGCGTGATTTAATTATGCCGTATCTTCTCCGGCGAATGAAGGCTGATGTAAATGCTCAACTTCCAAAGAAAACCGAGCATGTTCTGTTTTGCAGCCTTACAGCAGAGCAAATATCCGCTTATAGAGCATTTTTAGCGAGCACTGAAGTGGAGGACATATTGGATGGACAAAGGAATTCTCTTTATGGAATTGATGTGATGCGCAAGATCTGCAACCACCCTGACCTACTTGAAAGGGAACATGCCTTCAGCAACCCAGATTATGGAAATCCAGAACGTAGTGGGAAAATGAAAGTTGTAGCTCAAGTGCTTAATGTTTGGAAGGAGCAGGGTCACCGTGTTCTTCTTTTTACTCAAACCCAACAAATGCTTGACATTTTTGAGAAGTTTTTGACCACTTCTGGTCATAATTACCTGAGAATGGATGGTCTCACTCCTGTAAAACAGAGAATGGCTTTAATGGACGAATTTAATGCCTCGAGTGAGATTTTTGTTTTTATTTTAACAACCAAAGTTGGGGGTTTGGGGACAAATCTTACTGGTGCAGATAGGGTCATCATCTTTGACCCTGATTGGAATCCTTCAACTGATATGCAGGCTAGAGAGCGTGCATGGCGAATTGGTCAGAAACGGGATGTGACAATCTATAGGTTGATCACACGTGGAACTATTGAGGAGAAAGTGTATCATCGTCAGATTTACAAACATTTTCTTACCAATAAGATCTTGAAGAACCCACAGCAGAAAAGGTTCTTTAAAGCCCGAGATATGAAAGATCTTTTTGTATTGAATGTGGATGGAGAAACTGGGTCAACAGAAACGTCAAATATTTTCAGTCAAATATCTGAAGATATAAATATTATTGGGACACACCAAGATAATCAGGATAGGAATAAATATAGTCAAACCGCTGAACTGGGTTCTGAAGAAGCTGAAGTTGGTAATGATGGTAAATCATGGAAAGGGTCTTCAAGAGGAAAGGGGAAAGAGAAAGTTGACAAAAGTGATGGGGCTGATGAAGAAGCAAATATATTGAAAAGTCTTTTTGATGCCAATGGGATACATAGTGCCATGAACCATGATTTGATCATGAATGCCCATGATGAGGAGAAGATGAGGCTTGACGAGCAAGCTTCCCAGGTTGCACAAAGAGCAGCAGAAGCTTTACGTCAGTCACGAATGCTCCGAAGCCATGAAAGCGTATCCATTCCTACATGGACAGGAAGGTCAGGAGCTGCTGGTGCACCGTCATCTGTTCGGCGGAAGTTTGGTTCAACTGTGAATCACCAGTTGCTAAATAATAGCAAAGCATCTAATGAATTACCAAGCAGCGGGTCTAACAAATTTAATGGATATGCTGCCGGGGCCGGGGCATCTTCTGGCAAGGCATTATCTTCTGCCGAAATATTAGCTAAAATTCGAGGTACCCAAGAAAAAGCCATTAGTGCCGGGCTTGAGCATCAGTTTGGTATTTCGTCAAGTTCCACTAATCAGTCTAGATCTACAGATGTTGGAAATTCCAGGGCTCCTGAAAATTCATCTGGATTCCAACCTGAAGTATTGATTCGGAAACTCTGTACCTTTCTTCAACAGCACGGTGGTAGCTCTAGTTCATCCAGCATAGTTCAGCATTTCAAGGACAGGATTCCCtcaaaagatcttgccctgttcaagaatatgctaaaggaaatagcgactctgcagaAAGGCTCAAATGGTTCGTATTGGGTTCTGAAGCCAGACTATCAAGTATAG 3675 0.4038 MEEEQDRILLTSLGVKSANPEDIERHVIEKARNDSVIVAEAEGKTDEKECSNLPEIVDPKFSVKAELHQKLRAVEFEIGAVYSTIQQPRDVDKGGECGDVGEENLEEGIGEGDGSNLQRVLAADRLRSLKNTKAQLEKELSSLCKDGDSKSVEREKLIFSFVKEDRRPKKKLKEDKKLQKKTGKRLKKVSFDADTDFDAVLDAASAGFVETERDELVRKGILTPFHKLKGFERRIQQPEASTSHNAAEQENTDDLALSSVERAARSFSEAAKARPSSKLLEPEELPKLDAPTIPFRRLKKPLILSKPIDSEVDLNTGSKRKKRRPLPGRKWTKRVSREDRQLEESENANGGLDTSSCESLEVQDVELSEHESSYVTLEGGLKIPDNIFEALFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSGMYKPSIIVCPVTLLRQWKREAKKWYPQFHVEILHDSAQDLASKKKRAESDGSDYESNSSNDNDYERSVPSKNTRKWETLINRVMRSEFGLLITTYEQLRILGDQLLDIEWGYAVLDEGHKIRNPNAEITLACKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPIAVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTAEQISAYRAFLASTEVEDILDGQRNSLYGIDVMRKICNHPDLLEREHAFSNPDYGNPERSGKMKVVAQVLNVWKEQGHRVLLFTQTQQMLDIFEKFLTTSGHNYLRMDGLTPVKQRMALMDEFNASSEIFVFILTTKVGGLGTNLTGADRVIIFDPDWNPSTDMQARERAWRIGQKRDVTIYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQKRFFKARDMKDLFVLNVDGETGSTETSNIFSQISEDINIIGTHQDNQDRNKYSQTAELGSEEAEVGNDGKSWKGSSRGKGKEKVDKSDGADEEANILKSLFDANGIHSAMNHDLIMNAHDEEKMRLDEQASQVAQRAAEALRQSRMLRSHESVSIPTWTGRSGAAGAPSSVRRKFGSTVNHQLLNNSKASNELPSSGSNKFNGYAAGAGASSGKALSSAEILAKIRGTQEKAISAGLEHQFGISSSSTNQSRSTDVGNSRAPENSSGFQPEVLIRKLCTFLQQHGGSSSSSSIVQHFKDRIPSKDLALFKNMLKEIATLQKGSNGSYWVLKPDYQV 1224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00098 1224 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 739 898 IPR001650 -
Car04g00098 1224 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 654 911 IPR027417 -
Car04g00098 1224 MobiDBLite consensus disorder prediction 313 356 - -
Car04g00098 1224 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 403 602 IPR014001 -
Car04g00098 1224 MobiDBLite consensus disorder prediction 951 978 - -
Car04g00098 1224 MobiDBLite consensus disorder prediction 331 346 - -
Car04g00098 1224 MobiDBLite consensus disorder prediction 945 978 - -
Car04g00098 1224 SMART ultradead3 387 610 IPR014001 -
Car04g00098 1224 CDD DEXHc_ERCC6 391 601 - -
Car04g00098 1224 Coils Coil 1011 1031 - -
Car04g00098 1224 SMART helicmild6 765 848 IPR001650 -
Car04g00098 1224 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 374 652 IPR027417 -
Car04g00098 1224 Pfam SNF2-related domain 394 716 IPR000330 GO:0005524|GO:0140658
Car04g00098 1224 MobiDBLite consensus disorder prediction 1131 1154 - -
Car04g00098 1224 Coils Coil 119 146 - -
Car04g00098 1224 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED 248 1110 - -
Car04g00098 1224 MobiDBLite consensus disorder prediction 481 505 - -
Car04g00098 1224 Gene3D - 658 948 IPR027417 -
Car04g00098 1224 PANTHER SNF2/RAD54 FAMILY MEMBER 248 1110 - -
Car04g00098 1224 CDD SF2_C_SNF 734 859 - -
Car04g00098 1224 Gene3D - 360 651 IPR038718 -
Car04g00098 1224 Pfam Helicase conserved C-terminal domain 741 848 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00098 Car-Chr4 964951 971619 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00098 691 901 RAD5 or RAD16-like Gene Family AT5G22750 31.308 3.52e-24 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Car04g00098 SNF2_N 1.3e-61 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00098 K10841 - gmx:100820025 1922.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g00098 04 964951 971619 Car04g00098 04 964951 971619 ECH