Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00085 ATGAAGTGCCTGAAGTCAGGAGAGCCGCTGGGAGGAACAGACGAAACACGCCCTTCATCTGAATCCCTTGTAACTATGGACTTCTTCTCAGCTAGTAGTCATTCTTTCCTACCTGGGAAATTTGATAAGAAGCCGGACACTGGCAATATAGAAGAAGCAGAATTGTCTTTGCGTGAGAGTGGCGTATTGAACTATGAGGAAGCTAGAGCACTACTAGGAAGATATGAGTATCAAAAAGGAAATGTAGTAGCTGCTTTACATGTCTTTGAGGGAATAGATATAGGTGTTGTGACTCCCAAGATCAAACTTGCCCTTTCAAGAAACAGGGAACGCCGCAAGAAACATTCCCATAATCATGCTGAACCGGAGATGTCTATACATGCTGTTGGCTTACTGTTGGAAGCACTCTTCCTAAAAGCAAAATCTTTGCAGGTTCTTGAAAGATTTAAAGAAGCTGCCCAATCTTGCAAAGTTATTATGGACATAGTGGAGTCTTCGTTGCCTGATGGCTTGCCTGATAACTTTGGTGCTGAATGTAAATTGCAGGACACCGTGAGCAAGGCAGTTGAGCTGCTTCCAGAATTGTGGAAGCTTGCTGATTGTCCGCGTGAAGCTACTTTGTCTTACCGACGAGCACTCCTTCACCAATGGAATCTTGATGCAGGGACTACAGCAAAGATTCAGAAAGAATTTGTCGTTTTTCTTCTATATAGTGGTGCAGAAGTAATGCCCCCTAATCTGCGCACACAAATGGAAGGCTCGTTTGTACCGGGAGACAACATAGAAGAGGCTATACTTCTTTTAATGATTTTGCTAAGAAAAATCTCTCTCAATAGAATTGAATGGGATCCTTCCATTTTAGACCACCTTTCATTTGCTCTATCTATTTCAGGGGATCTATCAACTTTAGCCAATCATTTGGAAGAATTGATCCCGGGGACTATCCATCGAAGTGAAAGATTCCATGCGCTAGCACTTTGTTATTACGGAGCAGGTAAGGACTCAGTGGCACTTGATCTTCTCAGGAAATTGTTGAGCGGTAGTGAAAGGCCGAATTATGTTCCCGGTTTGTTAATGGCTTCTAAGATTTGTTGCGAGAACCCAACTCTCGCAGAAGAAGGGGTAAGCTTTGCTCAGAGAGGGCTTGAGAGTTTGGATGGAAGATGCAAGCAGTTAGAAAATGTTGCCAATTTTTATCTCGGTGTTTCACTTTCAGCACAATCGAAATTGGCTATTTCTGATTTTGAGAAGTTGAAGAGACAATCTGAGGCACTTCAGGCACTTGAAACCGCTGGAAGAATGACCAGAATGAGAGACCCGGTAGTACTATACCATCTCAGTTTAGAGTATGCAGAACAAAGGAAGTTGGATGCTGCAGTTTATTACGCGAAATGTGTCGTAAAACTGGAAGGTGGTTCTGATGTTAAAGGTTGGTTACTAGTGGCCCGGATATTATCTGCTCAAAAACAGTTTTTGGATGCCGAATCCATAATAAACGCTGCCTTGGATCAGACTGGGAAATGGGATCAGGGTGATTTATTGCGAGCAAAAGCTAAAATTCAAATTGCACAGGGCCAGTTAAAGAGTGCCATTGATACATACACTCAACTTCTTGCCGTTCTTCAAATTCAAAGTAAAAGTTTTGGTTCTTGGAAGAAGCTATATAAGGACAACAGAGATCGTGCTAGGAACTTGGAAGTGGAAATATGGCATGATCTTGCTCATGTGTACATCAGTCTTTCCCAGTGGCATGATGCAGAGGCGTGTCTTTCAAAATCTAAGGCCATCAAACCATACTCTGCTTCTAGATGTCATGCACTAGGTGTAATGTATGAAGCAAGGGGTCTTCATAAAGAGGCTCTAAAAGCTTTTGGTGATGCTTTGGACATTGATCCTGGCCATGTCCTCAGCTTAATCTCCACTGCTAAGGTACTTAGACATTGCAGTAAACGATCAAATCCTCCAGTCAAAAGTTTTTTTATGGATGCACTACGGCACGACAGATTGAATGCTTCTGCTTGGTATAATCTTGGCCTTTTTTACAAGTCTGAGGGCACAATATCATCATTGGTTGAAGCTACAGAATGTTTTCAAGCAGCACAGAATCTTGAAGAATCTACACCACTTGAACCTTTCAGATGA 2142 0.4234 MKCLKSGEPLGGTDETRPSSESLVTMDFFSASSHSFLPGKFDKKPDTGNIEEAELSLRESGVLNYEEARALLGRYEYQKGNVVAALHVFEGIDIGVVTPKIKLALSRNRERRKKHSHNHAEPEMSIHAVGLLLEALFLKAKSLQVLERFKEAAQSCKVIMDIVESSLPDGLPDNFGAECKLQDTVSKAVELLPELWKLADCPREATLSYRRALLHQWNLDAGTTAKIQKEFVVFLLYSGAEVMPPNLRTQMEGSFVPGDNIEEAILLLMILLRKISLNRIEWDPSILDHLSFALSISGDLSTLANHLEELIPGTIHRSERFHALALCYYGAGKDSVALDLLRKLLSGSERPNYVPGLLMASKICCENPTLAEEGVSFAQRGLESLDGRCKQLENVANFYLGVSLSAQSKLAISDFEKLKRQSEALQALETAGRMTRMRDPVVLYHLSLEYAEQRKLDAAVYYAKCVVKLEGGSDVKGWLLVARILSAQKQFLDAESIINAALDQTGKWDQGDLLRAKAKIQIAQGQLKSAIDTYTQLLAVLQIQSKSFGSWKKLYKDNRDRARNLEVEIWHDLAHVYISLSQWHDAEACLSKSKAIKPYSASRCHALGVMYEARGLHKEALKAFGDALDIDPGHVLSLISTAKVLRHCSKRSNPPVKSFFMDALRHDRLNASAWYNLGLFYKSEGTISSLVEATECFQAAQNLEESTPLEPFR 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00085 713 Pfam Tetratricopeptide repeat 602 633 IPR019734 GO:0005515
Car04g00085 713 PANTHER PROTEIN NPG1 1 713 IPR043376 -
Car04g00085 713 SUPERFAMILY TPR-like 417 539 IPR011990 GO:0005515
Car04g00085 713 Gene3D Tetratricopeptide repeat domain 567 709 IPR011990 GO:0005515
Car04g00085 713 Gene3D Tetratricopeptide repeat domain 45 565 IPR011990 GO:0005515
Car04g00085 713 PANTHER PROTEIN NPGR2 1 713 - -
Car04g00085 713 SMART tpr_5 511 544 IPR019734 GO:0005515
Car04g00085 713 SMART tpr_5 133 166 IPR019734 GO:0005515
Car04g00085 713 SMART tpr_5 475 508 IPR019734 GO:0005515
Car04g00085 713 SMART tpr_5 567 600 IPR019734 GO:0005515
Car04g00085 713 SMART tpr_5 671 707 IPR019734 GO:0005515
Car04g00085 713 SMART tpr_5 440 473 IPR019734 GO:0005515
Car04g00085 713 SMART tpr_5 601 634 IPR019734 GO:0005515
Car04g00085 713 ProSiteProfiles TPR repeat profile. 601 634 IPR019734 GO:0005515
Car04g00085 713 SUPERFAMILY TPR-like 512 685 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00085 Car-Chr4 848315 853420 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00085 1 713 Calmodulin-binding Proteins AT4G28600 58.287 0.0 788
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00085 K21843 - gmx:100800762 1145.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g00085 04 848315 853420 Car04g00085 04 848315 853420 ECH
Car04g00085 04 848315 853420 Car03g02346 03 69371949 69379270 PCT