Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00082 ATGGCTTCAAAAGCCTTAACCACTGGTTCTCACTCCCGAAACGGACACCGTTTTTCACACTGCGACTCGGATGAGGAAAATAGAGACTACAATCAGCAGAAGTGGAAACACAATGATCAAGCTTTATCTTCGGCTGGAAGTGTTGCTAGTAAGGATTTTGAAGAGCAGAAAGAATTCGACTATaatgaagagaaagggaaaggaaaacaagaaaagagaagTCTTATGAGCAATGACATAGGGGAAGATGATTACCTTTTGGCTGAGTCGAGGCAGCCACTGTGGCGAAAAATACCGATAGCTTCAAGCCTAATCAATCCGTATCGCATAGTCATAGTCACGCGTCTCGTTGTCCTAGTTTTCTTCTTCCACTTCCGCATCACAACACCGGTGCACGATGCATATGCCTTATGGATAATCTCTGTGGTGTGCGAAATATGGCTCTCTTTGTCTTGGATAGTAGACCAATTCCCCAAGTGGTTCCCCATGACTCGCGAAACTTACTTGGAACGCTTGTCCATGAGGCTTGAGCGCGAAGGCAAACCAAACCTTCTAGCTCCAATAGACGTCTTTGTTACCACTGCAGACCCTTTGAAAGAACCACCTATTATTACAGCAAACACAGTTCTATCAATCTTGTCTGTTGATTATCCTGTTAACAAAGTTAGCTGCTATGTCTCTGATGACAGTGCATCTATGCTTCTATTTGATACCTTAACAAAAACTTCTCAGTTTGCAAGAACTTGGGTTCCCTTTTGTAACAAGTACAACATTGAGCCAAGGGCACCTGAGTCTTATTTCTCTCAGAAAGTTGATTACTTGAAAGACAAGGTTCATCCTACTTTCGTAAAGGATCGCAGGGCCATGAAGAGAGAGTATGAAGAATTCAAGGTGAAAATCAATGTACTAGTGGCAAAGGCTCAGAAAAAACCAGAAGAGGGCTGGGTGTTGCAAGATGGTACTCCATGGCCTGGAAATAACACTGACAATCATCCAGGAATGATTCAGGTTTGTCTGGGAAGTTCCGGTGCACTAGACAACAAAGGCAAGGAGCTACCACGACTTGTGTATGTTTCACGCGAGAAATGTTCCGGCTATCAACACCACAGGAAAGCTGGTGCCATGAATGCTCTACTTCGAGTTTCTGCTGTTCTTAGCAATGCACCTTTTGTGTTGAATCTGGATTGTGATCAATACATCAATAATAGCAAGGCTCTTAGGGAGGCTATGTGTTTCCTAATGGACCCTCTACTTGGAAAGAAGGTCGCTTACGTCCAATTTCCACGAAGGTTTGATGGAATCGACTGCAACGATAGATATGCTAATCACAACACTGTATTCTTTGATATCAACATGAAATGCCTTGATGGGATTCAAGGTCCAGTTTATGTTGGTACTGGATGTGTTTTCAACAGGCAGGCATTATACGGCTATAAGCCACTATCTGATAAAAGGCGAAAGACGAGCTTTTGTTGTTGGCCTTTATGCTGCTGCTGTTGTTCTGGTGACTCTCCCTCCGCGTTTGATGGTGAAGAGAGTGATGATGAACTTGAAAACTGTAATGAGCAAGAGGAATCATCCTTCATGTCCCTCAAAATATTTGAGAGAAAGTTCGGAGAGTCACCGGTTTTCATCGCTTCTGCCTTGATGGAAGATGGTGGACTTCCAAAAGGCACGAATACCCAAATACTAATGAAGGAAGCCATTCATGTTATAAGTATTGGCTATGAAGAGAAAACTGAATGGGGCAAAGAGATAGGGTGGCTTTATGGTTCAGTGACAGAAGATATCTTGACAGGGTTTAACATGCATTGTAGAGGATGGAAATCAGTGTACTGCATGCCTAAGAGAGCAGCTTTTAAAGGATCTGCTCCTATAAACCTATCAGACAGATTACACCAAGTTCTGAAATGGGCTTTGGGTTCTACTCAGATTTTCTTCAGTGGCTATTGTCCATTGTGGTATGGCTATAGTGGAAAACTAAAATGGCTTCAACGGCTGGCCTACATGAATACTATCGTTTATCCGTTCACTTCAATTCCTCTGTTAGTCTACTGCACAATTCCGGCTATCTGTCTTCTCACTGGAAAGTTCATCCTCCCCACTCTGACAAACCTTGCAAGCATTTGGTTAATGGCTCTATTTATCTCTATCATTTTAACTTGTGTGCTCGAGCTCCGTTGGAGTAAGGTTAGCATTCATGACTGGTGGCGCAACGAGCAATTCTGGGTCATTGGAGGTGTTTCTGCACACCTTTTTGCAGTGTTTCAAGGCCTCCTTAAAGTTGCAGGACTAGACGCAAATTTCACTGTGCGAACAAAATCAGCGGACGGCGATGAATTTGGGCAGCTCTATCTCTTCAAGTGGACCACTCTTCTCATCCCACCAACAAGTATTGTAATCTTGAATATGGTGGGAATTGTTGCTGGAGTCTCTGAAGCCATTAACAAAGGTTATGATTCATGGGGACTTTTGTTTGGGAAGGTTTTTTTCTCCTTCTGGGTCATTGTTCACTTGTATCCTTTCCTCAAAGGTCTAATGGGAAGGCAAAACAGAACACCCGTCATAGTAATTCTCTGGGCAACACTTCTAGCATTGATTTTCTCGATGATTTGGGTGCAGATCGATATTTTCTTGCCCAAGCACAAAGGTCCAGTACTCCAACAATGCGGGGTAGAATGCTAA 2685 0.4264 MASKALTTGSHSRNGHRFSHCDSDEENRDYNQQKWKHNDQALSSAGSVASKDFEEQKEFDYNEEKGKGKQEKRSLMSNDIGEDDYLLAESRQPLWRKIPIASSLINPYRIVIVTRLVVLVFFFHFRITTPVHDAYALWIISVVCEIWLSLSWIVDQFPKWFPMTRETYLERLSMRLEREGKPNLLAPIDVFVTTADPLKEPPIITANTVLSILSVDYPVNKVSCYVSDDSASMLLFDTLTKTSQFARTWVPFCNKYNIEPRAPESYFSQKVDYLKDKVHPTFVKDRRAMKREYEEFKVKINVLVAKAQKKPEEGWVLQDGTPWPGNNTDNHPGMIQVCLGSSGALDNKGKELPRLVYVSREKCSGYQHHRKAGAMNALLRVSAVLSNAPFVLNLDCDQYINNSKALREAMCFLMDPLLGKKVAYVQFPRRFDGIDCNDRYANHNTVFFDINMKCLDGIQGPVYVGTGCVFNRQALYGYKPLSDKRRKTSFCCWPLCCCCCSGDSPSAFDGEESDDELENCNEQEESSFMSLKIFERKFGESPVFIASALMEDGGLPKGTNTQILMKEAIHVISIGYEEKTEWGKEIGWLYGSVTEDILTGFNMHCRGWKSVYCMPKRAAFKGSAPINLSDRLHQVLKWALGSTQIFFSGYCPLWYGYSGKLKWLQRLAYMNTIVYPFTSIPLLVYCTIPAICLLTGKFILPTLTNLASIWLMALFISIILTCVLELRWSKVSIHDWWRNEQFWVIGGVSAHLFAVFQGLLKVAGLDANFTVRTKSADGDEFGQLYLFKWTTLLIPPTSIVILNMVGIVAGVSEAINKGYDSWGLLFGKVFFSFWVIVHLYPFLKGLMGRQNRTPVIVILWATLLALIFSMIWVQIDIFLPKHKGPVLQQCGVEC 894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00082 894 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 3 894 - -
Car04g00082 894 MobiDBLite consensus disorder prediction 51 74 - -
Car04g00082 894 SUPERFAMILY Nucleotide-diphospho-sugar transferases 344 709 IPR029044 -
Car04g00082 894 MobiDBLite consensus disorder prediction 1 74 - -
Car04g00082 894 MobiDBLite consensus disorder prediction 15 35 - -
Car04g00082 894 Pfam Cellulose synthase 188 887 IPR005150 GO:0016020|GO:0016760|GO:0030244
Car04g00082 894 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 294 482 IPR029044 -
Car04g00082 894 MobiDBLite consensus disorder prediction 36 50 - -
Car04g00082 894 PANTHER CELLULOSE SYNTHASE-LIKE PROTEIN 3 894 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00082 Car-Chr4 830370 835009 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00082 86 894 Cell Wall Biosynthesis AT5G17420 68.834 0.0 1212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00082 K10999 - gmx:100777278 1509.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g00082 04 830370 835009 Car04g00082 04 830370 835009 ECH