Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00078 ATGGCGACCAAACAAAAAGTAGCAGCGGCCTATCGTGCAATGCAAAATCTTGAGATTCCTGAAGCAAAAGTAAAACCGGTACTAAAGAAACTCCTCAAACTGTATGATAAAAACTGGGAGCTTATTGAGGAAGAGAACTATAGAGCTCTAGCAGATGCTATATTTGAAAGCAATGACTTTGAGGAGCCAGAAGAGCAAAAGAAAAACAAGAAAGTTAATGAAGAAGAGATGGAGGACGAAGAAGCTTCGATGAATGATGAAGCTGCTCGACCTCTGAAAAGATTGAGATTAAGAGGACAAGAGAGTCAGCATGGGGATTGTGTGACAAACGATTCCCCTAGCTCAGCTGCTTCTCCTTTAAAGAAGCTTCGAATAGAAAAGGCCACAACACTCCAGAGTTTCCCTGCACAACAGCCTCAAAACAAAGCAGTGTCATCTGATGGAAATGTGAGGATTGAAGCACGTCTAGGTCCCATGCGAGATGCTAGTTCTGACAGGGGAAAGCAACCTGCATCGCCTCAAGTTTCTCTTGGAGGGAGAAGGCATATATCTGAAAGAGGATCTCCATCTAAACAACCATCAGTTGAACCTGGGAAGTCTCTGTTGCCAAGCAACCAAACGCCTCATGCTTATGCATTGATCATACCTAAAGATGAGCCTGTTGATGAAGTGCCTGAATATGAGGTTCCCATTGCAGTGATTCCTCCTGAACCATCAAGTTTAAGGGACTCATCAATGAAGAACGGCACTACTAGAAAGCAAGCTGGCCATGTCCCTGTGGCATCATCACAACACAGAGATAGAGTTAGAAATGAAGATATACGTCCTTCCTCGAATAAAGAAGTGGCTTCTAATGTTGTGATAGCCTCTTCAGCTAAGGGAGAAGTAAAACTTTCTCTTAGCTGCAACTCAGCTATTGCAGGACCAGATTTTCGCATGGCTAATCAGGAACAACTTCTAAAGATGATGGAGGATAAATGTCTGCGATCATATAAAATCACTGACCCAAATTTTTCGATCGCGAAAATGTTGAGAGATATATGTGATTGCATGTTGGAATTCAGTACTGATTCAAATGGTGACTCAAAAGAAGGTTCTATGACAAGATCAGGTGTTGATGTGTTGAAGGAATCAGAGGCACATGACACTCCGATAGTTGAGGGAAATAAAGAATTGGATATATTGTCTCACTCATCAAATGGATCAGTTCATGTTAATTCTTTTTCTGCCTTGGTTTCACCTCGAAGTCCCTTTTCGCCAACCAACCAGAGTAGTCTGGATGATGGTGTACTACTTTCCAAGATGGATAAGTCTCATGATTTTTCGCAAAGCGATGGCAAAAAGCAGCTAGAAGATCCCGTGTCTCCAAATTCACGTAGTTTAGTGATTGTTCCACATCATCAGCTTACAGCCGATGATGCAAGGTCTTTTCATGATGTTAATGACCTCACGAAAGGAAATGAAAATGTTCAAATTTCATGGGTGAATGAAACTACTGATGATTTTCCACCATCTTTCAACTACATACCCCAAAACCTTGTGTTCCAAGATGCTCATGTTAACATTTCTCTATCTCGTATTGGGACTGCGGACTGTTGTTCCTGTGTAGGCAGCTGTGTCTATTCAACACATTGTGCCTGTACAGATAAAGCTGGGGGCGAATTGGCATATACTGCTCAAGGCCTAATGAAAGAAGAGACTTTGGAAGAGTGCATTGCTATCAGTCACAACCCCCAACAGCATTACTTTTATTGCAAAGATTGCCCACTTGAAAGATCCAAGAATGATGGTTGTTTGGAACCATGCAAAGGACATTTGAAGAGGAAGTTTATTAAAGAATGTTGGAGCAAATGTGGCTGTGGGAAACAATGTGGCAATCGGGTTATCCAGCGAGGAATAACATATAACTTGCAGGTATTTTTCACTTCTGAAGAAAAAGGATGGGGTCTTCGTACCTTAGAGGACCTGCCAAAAGGTGCATTTGTGTGTGAGTTTGCTGGAGAGATTTTAACCATCGGAGAGTTGCATGAGAGGAACATGAAATGCACTGAAAATGGGAAGTCTATGTACCCAATTCTACTAGATGCAGATTGGGATTCAGGATTTGTGAAGGATGAAGAAGCTTTATGCCTAGATGCAGCATCCTTTGGTAACATTGCTAGATTTATCAATCACAGATGTTTTGATGCAAACTTGGTTGAAATCCCAATTCAAATTGAGTGTCCAGATCGTTACTACTATCATTTTGCCCTTTTCACTTCCAGAAATATAGCAGCGCAGGAAGAGCTCACCTGGGATTACGGCATTGACTTTGATGACCATGATCAGCCTGTCAAGCTGTTCCAATGCAGATGTGGCAGTAAGTTCTGCAGGAATATGAAGCGATCAACCAGAACCACTAGATCTGTAACAATTGCGAGGTGA 2424 0.4191 MATKQKVAAAYRAMQNLEIPEAKVKPVLKKLLKLYDKNWELIEEENYRALADAIFESNDFEEPEEQKKNKKVNEEEMEDEEASMNDEAARPLKRLRLRGQESQHGDCVTNDSPSSAASPLKKLRIEKATTLQSFPAQQPQNKAVSSDGNVRIEARLGPMRDASSDRGKQPASPQVSLGGRRHISERGSPSKQPSVEPGKSLLPSNQTPHAYALIIPKDEPVDEVPEYEVPIAVIPPEPSSLRDSSMKNGTTRKQAGHVPVASSQHRDRVRNEDIRPSSNKEVASNVVIASSAKGEVKLSLSCNSAIAGPDFRMANQEQLLKMMEDKCLRSYKITDPNFSIAKMLRDICDCMLEFSTDSNGDSKEGSMTRSGVDVLKESEAHDTPIVEGNKELDILSHSSNGSVHVNSFSALVSPRSPFSPTNQSSLDDGVLLSKMDKSHDFSQSDGKKQLEDPVSPNSRSLVIVPHHQLTADDARSFHDVNDLTKGNENVQISWVNETTDDFPPSFNYIPQNLVFQDAHVNISLSRIGTADCCSCVGSCVYSTHCACTDKAGGELAYTAQGLMKEETLEECIAISHNPQQHYFYCKDCPLERSKNDGCLEPCKGHLKRKFIKECWSKCGCGKQCGNRVIQRGITYNLQVFFTSEEKGWGLRTLEDLPKGAFVCEFAGEILTIGELHERNMKCTENGKSMYPILLDADWDSGFVKDEEALCLDAASFGNIARFINHRCFDANLVEIPIQIECPDRYYYHFALFTSRNIAAQEELTWDYGIDFDDHDQPVKLFQCRCGSKFCRNMKRSTRTTRSVTIAR 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00078 807 Gene3D - 1 59 IPR043017 -
Car04g00078 807 SMART set_7 635 774 IPR001214 GO:0005515
Car04g00078 807 MobiDBLite consensus disorder prediction 263 277 - -
Car04g00078 807 Coils Coil 67 87 - -
Car04g00078 807 MobiDBLite consensus disorder prediction 103 117 - -
Car04g00078 807 Pfam Ubiquitin-binding WIYLD domain 3 59 IPR018848 GO:0018024
Car04g00078 807 MobiDBLite consensus disorder prediction 241 258 - -
Car04g00078 807 MobiDBLite consensus disorder prediction 235 278 - -
Car04g00078 807 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR2-LIKE PROTEIN 1 296 - -
Car04g00078 807 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR2-LIKE PROTEIN 357 803 - -
Car04g00078 807 CDD SET_SETDB-like 504 768 - -
Car04g00078 807 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 357 803 - -
Car04g00078 807 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 296 - -
Car04g00078 807 MobiDBLite consensus disorder prediction 58 205 - -
Car04g00078 807 Gene3D SET domain 469 794 IPR046341 -
Car04g00078 807 MobiDBLite consensus disorder prediction 130 147 - -
Car04g00078 807 ProSiteProfiles SET domain profile. 635 768 IPR001214 GO:0005515
Car04g00078 807 Pfam SET domain 647 768 IPR001214 GO:0005515
Car04g00078 807 SUPERFAMILY SET domain 489 791 IPR046341 -
Car04g00078 807 MobiDBLite consensus disorder prediction 188 205 - -
Car04g00078 807 SMART preset_2 480 619 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Car04g00078 807 MobiDBLite consensus disorder prediction 438 457 - -
Car04g00078 807 ProSiteProfiles Pre-SET domain profile. 531 632 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Car04g00078 807 MobiDBLite consensus disorder prediction 60 77 - -
Car04g00078 807 MobiDBLite consensus disorder prediction 84 101 - -
Car04g00078 807 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 807 IPR025776 -
Car04g00078 807 Pfam Pre-SET motif 484 627 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00078 Car-Chr4 795067 804966 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00078 482 792 Su(var)3-9 homologs AT1G73100 30.909 2.12e-30 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Car04g00078 Pre-SET 6.1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00078 - - gmx:100787369 1043.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g00078 04 795067 804966 Car04g00078 04 795067 804966 ECH
Car04g00078 04 795067 804966 Car03g02356 03 69476250 69482514 PCT