Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00048 ATGAATCACTATGTTCCAGATTTCGATATTCAAATGGACGACGAAGAGGATTACCCTATACACATCTCAAAGAAACCTTCCCTGCAAAACGATGAGATCATGGAACTATTATGGCAAAACGGTCAAGTCGTGGTGCAAAGCCAAAACCACCGCCAATTTAGAAAACCGCCACCGCCAACCACCAACACCGGCGATCGTGTGATTCCTGAGAGAGGAATTCGATCCTCCGATGCTGAACACTATAATATCAACCAACATCTCTTCATGCAAGAAGACGAAATGGCATCGTGGCTTTTCGATTCAATGAACGAAGATCCTCCTTTCAGCCGTCACGATTTCAGCGCAGGAACACTCTTCCATCCACCAACCGTTACTGGCGATCAGAAATACGGCGGTGTTGTACAATCCAACGGCCGTGAATCGGAGCCTCTTCAGCAACCGAGGCCAGCAGCGGCTCCTCGGCCTCCGATTCCACCGTCGAAGAAGCCGGAGCAGGCGACTTGTAGGAAACAGAATTTCGGGCATTTCTCGACCCGCAGCAATGCGGGGAGCGAGCCAGGTGCGTCTTCAAGTTCGATGATTGCGGCGGCGCAGGAATCAACGGTGGTGGATTCATGCGATACGCCGTTCATGGCGGCAAAAACTTATGTTGCATCGACGCTATCGGAAACAGCCAGGAGCACGGCGGAAACTGGATTCGTTAGCATGAGCTCCGCCGGAAAAGCGGAAACATCGGCCGGTGGAAGGGAGACGACGACGGTTGATATGACAGTGACGTCATCTCTTGGAGGTTCAAGCGAGACAGTGTTGGACCGGAAGAGAAAAGGTCGTGAACCGGATGAATCTGAGTTTCAAAGCGAGGATGTCGATTTTGAATCCAAGGAAGAAAAAAAACAAATCCGTGGATCTGCATCGAAGAGATCCCGTGCTGCAGAGGTTCATAATCTCTCCGAAAGGAGGCGTCGAGATAGAATTAATGAAAAGATGAAAGCTTTGCAAGAACTTATACCTCGGTGCAACAAGTCTGACAAAGCATCAATGTTAGATGAAGCAATCGAATACTTAAAGTCATTGCAGTTACAAGTACAGATGATGTCCATGGGATGTGGCATGGTACCTATGATGTTTCCTGGAATTAGGCAGTATATGCCGGCaatggggatgggaatgggaatgggtttggggatggaaatgggaatgggaatgAACAGAACAGTGATGCCATTTCCAAATATGATAGCAAGTACTCCTTTACCAGCAGCAACAGTAGCTGCTCATTTTGGACAAAGGTTTGCTATGGCTCCTTTCCATATGCCCCATGTTGCTGCAGCAGCACCTGATTCATCAGATAATAACCCCCTTAACTCCCTTGGTAGTAGTGCTACTCTTTCTCCAGATCAATCACGCATCCCAAACTTCACTGATACTTATCACCAATTCCTCGGTCCACACCAGCTGCAGATGCAATTAATGCAGTCAATGAACCAGCAAAGTGTCAACAAGCCAGGTACCAGTGGGGCCCAAGATAATCCAGAAAAGCATCAGTCAGGTTAA 1554 0.4653 MNHYVPDFDIQMDDEEDYPIHISKKPSLQNDEIMELLWQNGQVVVQSQNHRQFRKPPPPTTNTGDRVIPERGIRSSDAEHYNINQHLFMQEDEMASWLFDSMNEDPPFSRHDFSAGTLFHPPTVTGDQKYGGVVQSNGRESEPLQQPRPAAAPRPPIPPSKKPEQATCRKQNFGHFSTRSNAGSEPGASSSSMIAAAQESTVVDSCDTPFMAAKTYVASTLSETARSTAETGFVSMSSAGKAETSAGGRETTTVDMTVTSSLGGSSETVLDRKRKGREPDESEFQSEDVDFESKEEKKQIRGSASKRSRAAEVHNLSERRRRDRINEKMKALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCGMVPMMFPGIRQYMPAMGMGMGMGLGMEMGMGMNRTVMPFPNMIASTPLPAATVAAHFGQRFAMAPFHMPHVAAAAPDSSDNNPLNSLGSSATLSPDQSRIPNFTDTYHQFLGPHQLQMQLMQSMNQQSVNKPGTSGAQDNPEKHQSG 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00048 517 MobiDBLite consensus disorder prediction 129 143 - -
Car04g00048 517 MobiDBLite consensus disorder prediction 114 168 - -
Car04g00048 517 Pfam Helix-loop-helix DNA-binding domain 313 359 IPR011598 GO:0046983
Car04g00048 517 MobiDBLite consensus disorder prediction 49 68 - -
Car04g00048 517 SMART finulus 315 364 IPR011598 GO:0046983
Car04g00048 517 Coils Coil 315 335 - -
Car04g00048 517 MobiDBLite consensus disorder prediction 448 475 - -
Car04g00048 517 MobiDBLite consensus disorder prediction 492 517 - -
Car04g00048 517 MobiDBLite consensus disorder prediction 148 162 - -
Car04g00048 517 CDD bHLH_AtPIF_like 309 372 - -
Car04g00048 517 MobiDBLite consensus disorder prediction 240 267 - -
Car04g00048 517 MobiDBLite consensus disorder prediction 290 325 - -
Car04g00048 517 Gene3D - 304 367 IPR036638 GO:0046983
Car04g00048 517 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 309 358 IPR011598 GO:0046983
Car04g00048 517 MobiDBLite consensus disorder prediction 444 475 - -
Car04g00048 517 MobiDBLite consensus disorder prediction 268 282 - -
Car04g00048 517 MobiDBLite consensus disorder prediction 240 325 - -
Car04g00048 517 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 306 375 IPR036638 GO:0046983
Car04g00048 517 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 1 517 IPR031066 -
Car04g00048 517 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 517 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00048 Car-Chr4 510571 517923 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00048 1 364 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 39.267 2.88e-56 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car04g00048 HLH 6.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00048 - - mtr:MTR_1g069155 665.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g00048 04 510571 517923 Car04g00048 04 510571 517923 ECH
Car03g02392 03 69863263 69868662 Car04g00048 04 510571 517923 PCT