Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00035 ATGGGAGAAGAAGCGGTTTGTGTGCAAGCCTTGGTAGATGGAAATACGGAAAACAATGAGGAATTGAGGACGGAATTGAAACGTGAGTATAACCAATGCGTTGCTGATACTGAACCCAATGTTTCTCCGAATAAAAAACAAGCAAAAGAAGTTTCAAACGATGAAGTTCGTTCTGAAGTTTCAAACCCCAATATTTCTGCAACAGAACATGCACTAACTTTTCATGATATCAGTAGCCAACCGACTGAATCGGCAGATGTTAACCATGCAGAGTGTGGGGAACTAACTTCTACTTGTTTTGAGaattctagttctcatgagactttgagtgatgaagccggtaatcagaataatgataacgataataataataatgtttatgagaatgataaaggcaCGAGTAGCACGGCAGTGATGTCCTGTGTTGTGATGGAAATCCCGAAGCATGTTAGTTCATCTGGTATCAGAAAGATTACTTTTAAGTTTAGTAAAAAGAAGGAGGACTATGGTTATCAAACACCTATACCTGATGGAAATGGTTATGGCTTTCATGGGGATGATGAAGAATATTTGGCAAAGGATGATTGTAATAGTGGGTTGTTAGAGAGTTCATATGGCATGGGATATGTTCCTGATGGATATGGAGATATGGAGTTGTATTCTGGAAATATGGAATTGAAAATGTCAAAGAAAGTTGTCCCCAACAACTTCCCCACAAATGTCAAAAAGCTGTTATCAACTGGTATCCTTGATGGAGCTGCAGTGAAATATATTTACAATCCCGGAAAGGTTGAGCTCGAAGGGGTTATTGGTGGTGGTGGATATTTGTGTGGCTGTTCAATGTGCAGTTACTCCAGAGTGCTCAGTGCCTATGAGTTCGAGCAGCATGCTGGTGCCAAGACTAGACATCCAAATAATCACATATTCCTAGAAAATGGAAAACCAATTTATAGCATTATTCATGAAATAAAAACTGCTCCACACAGCATGCCAGATGAGATTATAAAGAATGTGGCTGGTTCATCTATCAACGAGGAATCCTTCCAGGTTTGGAAAGAAAGTCTCCTACAAAGCAACAGGAAGGCTCCAACTCGTAAAAATTACAGTACAAAGTTTGTTGGCATGCCTCATACAAACAACAGTCATTATGTAGAAAATGCAAGCCACGTCTCATCTTTGCATGGGCGAAATCATTTTGAGCAGCAAATGTACGTGAACCAAACAACTGATGAGTGGAAACGTGTGGTGAAGAAGCCAAGCTCCTGCATTTCCAACCTAGGTATACCACAAAAGAGAAGTGCTGATGGTTGCACTAAGAAGAGGGACAATGATTTGCACAGGTTACTTTTTATGCCTAATGGCCTACCAGATGGTGCTGAGTTGGCTTATTACGTCAAAGGACAGAAATTACTTGGAGGTTACAAACAGGGAAATGGTATAGTCTGTGGTTGCTGTGATATAGAGATAAGCCCTTCACAGTTTGAAGCCCATGCTGGAATGGCGGCTAGACGTCAACCTTACCGCCACATATATACTTCCAATGGACTGACACTTCATGACATAGCTCTCTCTTTAGCAAATGGTCAAAACCTTACCACGGGAGATAGTGATGATATGTGTGCAATATGTGGAGATGGAGGAGATTTGATTCTATGCAATGGATGTCCTAGGGCCTTTCACGCAGCCTGCTTGGGTTTACACAGTGTACCAGATAGTGGTTGGCATTGTCTAAATTGTAATGATAATACTGGTAATGGAAGAGGTGCGAGGCCAATCATGGTACGGTTGACACGGGTTGATAAAGCACCAGATTATGAAATGGGTGGATGTGTTGTTTGCAGGGAATATGATTTCAGTGTTGCTAAATTTGATGACCGAACAGTAATAATTTGTGATCAGTGTGAGAAGGAGTATCATGTTGGTTGCTTGCGGGATATTGGACTGTGTGAGTTGGAAGAGCTTCCCAAGGATAAGTGGTTTTGTTGTGATGACTGCAATCGAATCTATGTGGCTCTACAGAGTTCAGTTTCCGCCGGAGCAGATACTATACCACCTTCATTGTCTGAACTAATAATTAGGAAGCACGAGGAAAGGGGATTATGTACACATGGAGATGTGAATGATATTCAGTGGAGAATTTTAAGTGGGAAAAGTCGTTATCCTGAGCATTTACCGTTACTTTCACGAGCTGCTGCAATTTTTCGAGAGTGTTTTGATCCCATTGTTGCTATATCTGGTCGGGACCTGATTCCTGTTATGGTCTATGGGAGAAATATTTCTGGCCAAGAATTTGGGGGAATGTATTGCATCGTTTTAATTGTGAATTCTATTGTAGTATCAGCCGGACTTCTTAGGATTTTTGGCTGCAATATTGCTGAGCTTCCTCTGGTAGCTACAAGTAGAGAGCATCAAGGAAAAGGTTATTTTCAAGTGCTGTTCTCTTGCATAGAGCGGTTGTTGTCTTCTCTAAATGTAGAAAAGCTGGTGCTCCCAGCTGCAGGGGATGCGGAGTCAATTTGGACAAAGAAATTAGGCTTTCACAAGATGAGTGAAGATCAGTTATCAAAATATCTTAGAGAGGTGCAGCTCACCCTCTTCAACAAAACTTCAGTGCTGGAAAAGACAGTGCAGCTGGCGACAGAATGA 2646 0.4021 MGEEAVCVQALVDGNTENNEELRTELKREYNQCVADTEPNVSPNKKQAKEVSNDEVRSEVSNPNISATEHALTFHDISSQPTESADVNHAECGELTSTCFENSSSHETLSDEAGNQNNDNDNNNNVYENDKGTSSTAVMSCVVMEIPKHVSSSGIRKITFKFSKKKEDYGYQTPIPDGNGYGFHGDDEEYLAKDDCNSGLLESSYGMGYVPDGYGDMELYSGNMELKMSKKVVPNNFPTNVKKLLSTGILDGAAVKYIYNPGKVELEGVIGGGGYLCGCSMCSYSRVLSAYEFEQHAGAKTRHPNNHIFLENGKPIYSIIHEIKTAPHSMPDEIIKNVAGSSINEESFQVWKESLLQSNRKAPTRKNYSTKFVGMPHTNNSHYVENASHVSSLHGRNHFEQQMYVNQTTDEWKRVVKKPSSCISNLGIPQKRSADGCTKKRDNDLHRLLFMPNGLPDGAELAYYVKGQKLLGGYKQGNGIVCGCCDIEISPSQFEAHAGMAARRQPYRHIYTSNGLTLHDIALSLANGQNLTTGDSDDMCAICGDGGDLILCNGCPRAFHAACLGLHSVPDSGWHCLNCNDNTGNGRGARPIMVRLTRVDKAPDYEMGGCVVCREYDFSVAKFDDRTVIICDQCEKEYHVGCLRDIGLCELEELPKDKWFCCDDCNRIYVALQSSVSAGADTIPPSLSELIIRKHEERGLCTHGDVNDIQWRILSGKSRYPEHLPLLSRAAAIFRECFDPIVAISGRDLIPVMVYGRNISGQEFGGMYCIVLIVNSIVVSAGLLRIFGCNIAELPLVATSREHQGKGYFQVLFSCIERLLSSLNVEKLVLPAAGDAESIWTKKLGFHKMSEDQLSKYLREVQLTLFNKTSVLEKTVQLATE 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00035 881 SUPERFAMILY FYVE/PHD zinc finger 535 582 IPR011011 -
Car04g00035 881 Pfam Tify domain binding domain 268 319 IPR032308 -
Car04g00035 881 Pfam Tify domain binding domain 473 522 IPR032308 -
Car04g00035 881 Gene3D - 707 874 - -
Car04g00035 881 ProSitePatterns Zinc finger PHD-type signature. 540 579 IPR019786 -
Car04g00035 881 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 607 668 IPR013083 -
Car04g00035 881 Coils Coil 12 32 - -
Car04g00035 881 ProSiteProfiles Zinc finger PHD-type profile. 537 582 IPR019787 -
Car04g00035 881 MobiDBLite consensus disorder prediction 103 131 - -
Car04g00035 881 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 527 597 IPR013083 -
Car04g00035 881 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 877 - -
Car04g00035 881 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 765 851 IPR016181 -
Car04g00035 881 ProSitePatterns Zinc finger PHD-type signature. 610 665 IPR019786 -
Car04g00035 881 Pfam PHD-finger 539 580 IPR019787 -
Car04g00035 881 CDD PHD1_AIRE 539 579 - -
Car04g00035 881 SUPERFAMILY FYVE/PHD zinc finger 606 663 IPR011011 -
Car04g00035 881 PANTHER AUTOIMMUNE REGULATOR 1 877 - -
Car04g00035 881 MobiDBLite consensus disorder prediction 36 59 - -
Car04g00035 881 SMART PHD_3 539 580 IPR001965 -
Car04g00035 881 SMART PHD_3 609 666 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00035 Car-Chr4 359177 371225 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00035 1 881 PHD Transcription Factor Family AT3G53680 52.544 0.0 903
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Car04g00035 TDBD 1.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00035 - - gmx:100808999 1474.53