Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00024 ATGGTATCAAGGCTGAAGCACGAAAATTTTGTTCAGTTGCTTGGATATTGCATTGATGGAAACTCTCATATTCTTGCTTATGAATTTGCATCTAATGGGTCTCTTCATGACATTTACATGGTAGAAAAGGGGTTAATGGAGCGCAACCTGGACATCAAGTCAAGCAATGTGCTGATCTTTGATGATAATGTTGCTAAAATTGCAGATTTTGATTTGTCAAATCAGGCTCCAGACATGGCTGCACGTCTTCATTCCACCCATGTCCTTGGAACCTTTGGTTACCATGCACCAGAATATGCAATGACTGGACAATTGAATGCTAAGAGTGGTCAGAGTCTGGTTACTTGGGCTACATCTAAACTCAGTGATGATAAGGTCAGACAGTGTGTTGATACAAGACTAGGAGGAGAATACCCACCAAAAGCTGTTGCTAAGATCCAGTGGCTCCGAATCAGCATAATAGCTTTGCACGTTCAATTCCTGATTCAATGCCAAATTACAATAGTCTCCCGGTGGAGGACAACTTAA 528 0.4148 MVSRLKHENFVQLLGYCIDGNSHILAYEFASNGSLHDIYMVEKGLMERNLDIKSSNVLIFDDNVAKIADFDLSNQAPDMAARLHSTHVLGTFGYHAPEYAMTGQLNAKSGQSLVTWATSKLSDDKVRQCVDTRLGGEYPPKAVAKIQWLRISIIALHVQFLIQCQITIVSRWRTT 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00024 175 Pfam Protein kinase domain 51 100 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g00024 175 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 45 - -
Car04g00024 175 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 51 109 - -
Car04g00024 175 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 110 160 - -
Car04g00024 175 SUPERFAMILY Protein kinase-like (PK-like) 2 109 IPR011009 -
Car04g00024 175 Gene3D Transferase(Phosphotransferase) domain 1 42 164 - -
Car04g00024 175 ProSiteProfiles Protein kinase domain profile. 1 175 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g00024 175 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 110 160 - -
Car04g00024 175 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 51 109 - -
Car04g00024 175 Gene3D Transferase(Phosphotransferase) domain 1 1 41 - -
Car04g00024 175 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00024 Car-Chr4 250801 252238 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00024 1 155 Receptor kinase-like Gene Family AT4G02010 35.681 1.46e-25 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Car04g00024 Pkinase 4.5e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00024 K13436 - gmx:100808383 226.868