Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00020 ATGAAGAGGCAGAGAAATGAAGAAGTAGAAAACATAAATTTGGCAAATTGTCTAATTCTACTATCTCATCCCAAAGAAAGCAAATACAAGAAACATTTTGGACCTACGGAATTTGAGTGCATCACATGCAACCGCAAGTTCTCATCCTTTCAGGCCCTTGGTGGCCATAGAGCTAGTCACAAAAAGCCCAAACTAGATACCACCGAACTTAAAGTACAGGCCCAAACCTTGAGTTTATGGAATAAGCCCAAAATGCATGGATGCTACATTTGTGGGAAGGAATTCTCTGTGGGCCAGGCTTTGGGAGGACACATGAGAAGGCATAGAATTGCCCTTAATGAAGGGGTTTCTAAGAAAAAGAAGATTGTTGGAGAAGTCCCAATTTTGAAAAGATCGAATAGTAAGAAGGTTATGTGTTTGGACTTGAACTTAACACCTTTGCATAACGACTTGAATTTGTTGTTTGGAAATATGCCACCTAAAGTTCATACTTTGTTCAATACTTAA 507 0.3905 MKRQRNEEVENINLANCLILLSHPKESKYKKHFGPTEFECITCNRKFSSFQALGGHRASHKKPKLDTTELKVQAQTLSLWNKPKMHGCYICGKEFSVGQALGGHMRRHRIALNEGVSKKKKIVGEVPILKRSNSKKVMCLDLNLTPLHNDLNLLFGNMPPKVHTLFNT 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00020 168 Pfam C2H2-type zinc finger 38 63 - -
Car04g00020 168 Pfam C2H2-type zinc finger 86 110 - -
Car04g00020 168 SUPERFAMILY beta-beta-alpha zinc fingers 38 108 IPR036236 -
Car04g00020 168 ProSitePatterns Zinc finger C2H2 type domain signature. 88 108 IPR013087 -
Car04g00020 168 SMART c2h2final6 38 60 IPR013087 -
Car04g00020 168 SMART c2h2final6 86 108 IPR013087 -
Car04g00020 168 PANTHER ZINC FINGER PROTEIN ZAT5 1 161 - -
Car04g00020 168 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 161 - -
Car04g00020 168 Gene3D Classic Zinc Finger 35 108 - -
Car04g00020 168 ProSiteProfiles Zinc finger C2H2 type domain profile. 86 108 IPR013087 -
Car04g00020 168 ProSiteProfiles Zinc finger C2H2 type domain profile. 38 65 IPR013087 -
Car04g00020 168 ProSitePatterns Zinc finger C2H2 type domain signature. 40 60 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00020 Car-Chr4 221275 221796 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00020 1 166 C2H2 Transcription Factor Family AT2G37430 45.198 8.13e-44 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car04g00020 zf-C2H2_6 1.3e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00020 - - aprc:113870747 232.646