Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00019 ATGATGAAGAGACAAAGAGAAACCGAAGAAAAAGAGAGCATAGATTTAGCAACAAGTCTAATGTTACTTTCTCGTACACAACAAAACAAAACATTTTCTTCTCCAATTGAGTTTGAGTGCAAAACATGCAACCGAAAATTCTCATCTTTTCAAGCATTAGGTGGTCATAGAGCAAGTCACAAGAAATTGAAAATTGAGGGACAACAAGAATCACTCAAAGGAAACAATAATAATGTTAAAAAAATGCATGAGTGTTCGATTTGTGGACAAGAATTCAAATTGGGTCAAGCTTTAGGTGGACACATGAGAAGACATAGAAATAATGAAGCGTTTTCGAATTGTTTTGAAAAATCTTCTCCTGTTTTGAAAAGATCGAATAGTAAGAGGGTTATGTGTTTGGAATTGGACTTGAATTTGACACCTTTGGAAAATGACTTGAAGTTGTTGTTTGGAAATAAGGCACCTCGAGTTGATCtttctttattttga 489 0.3354 MMKRQRETEEKESIDLATSLMLLSRTQQNKTFSSPIEFECKTCNRKFSSFQALGGHRASHKKLKIEGQQESLKGNNNNVKKMHECSICGQEFKLGQALGGHMRRHRNNEAFSNCFEKSSPVLKRSNSKRVMCLELDLNLTPLENDLKLLFGNKAPRVDLSLF 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00019 162 Pfam C2H2-type zinc finger 83 106 - -
Car04g00019 162 Pfam C2H2-type zinc finger 38 62 - -
Car04g00019 162 Gene3D Classic Zinc Finger 35 105 - -
Car04g00019 162 ProSiteProfiles Zinc finger C2H2 type domain profile. 38 65 IPR013087 -
Car04g00019 162 SMART c2h2final6 83 105 IPR013087 -
Car04g00019 162 SMART c2h2final6 38 60 IPR013087 -
Car04g00019 162 PANTHER ZINC FINGER PROTEIN ZAT5 2 156 - -
Car04g00019 162 ProSiteProfiles Zinc finger C2H2 type domain profile. 83 110 IPR013087 -
Car04g00019 162 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 2 156 - -
Car04g00019 162 SUPERFAMILY beta-beta-alpha zinc fingers 38 105 IPR036236 -
Car04g00019 162 ProSitePatterns Zinc finger C2H2 type domain signature. 85 105 IPR013087 -
Car04g00019 162 ProSitePatterns Zinc finger C2H2 type domain signature. 40 60 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00019 Car-Chr4 219275 219885 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00019 2 159 C2H2 Transcription Factor Family AT2G37430 49.432 1.87e-46 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car04g00019 zf-C2H2_6 2.5e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00019 - - gmx:100526874 222.631
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02419 03 70093117 70093909 Car04g00019 04 219275 219885 PCT