Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00013 ATGGCGAGGATTAAGGTGTATGAGCTGAGGAACAAAACCAAGGCGGATTTGTTGAACCAGTTGAAAGATCTGAAGGCGGAACTCGCTTTGCTACGAGTGGCGAAAGTCACCGGCGGTGCGCCTAACAAGCTCTCCAAAATAAAAGTTGTGAGGCTTTCAATAGCACAAGTGTTGACAGTGATTTCACAGAAGCAGAAAGCTGCACTCAGAGAGGTTTATAAGAATAAGAAGTATTTGCCACTTGACCTACGTCCTAAGAAGACCCGTGCCATTCGAAGACGCCTTACCAAACACCAGGCATCATTGAAGACAGAACGAGAGAAGAAGAAGGAGATATACTTTCCATTAAGAAAGTATGCAATCAAAGCTTAG 372 0.4435 MARIKVYELRNKTKADLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREVYKNKKYLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEIYFPLRKYAIKA 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00013 123 TIGRFAM L29: ribosomal protein uL29 8 64 IPR001854 GO:0003735|GO:0005840|GO:0006412
Car04g00013 123 Hamap 50S ribosomal protein L29 [rpmC]. 4 64 IPR001854 GO:0003735|GO:0005840|GO:0006412
Car04g00013 123 Gene3D - 78 123 - -
Car04g00013 123 Pfam Ribosomal L29 protein 8 64 IPR001854 GO:0003735|GO:0005840|GO:0006412
Car04g00013 123 SUPERFAMILY Ribosomal protein L29 (L29p) 4 65 IPR036049 GO:0003735|GO:0005840|GO:0006412
Car04g00013 123 Gene3D - 1 77 IPR036049 GO:0003735|GO:0005840|GO:0006412
Car04g00013 123 PANTHER 60S RIBOSOMAL PROTEIN L35-LIKE 1 122 - -
Car04g00013 123 PANTHER 60S RIBOSOMAL PROTEIN L35 1 122 IPR045059 GO:0000463|GO:0022625
Car04g00013 123 CDD Ribosomal_L29_HIP 8 64 - -
Car04g00013 123 Coils Coil 7 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00013 Car-Chr4 134677 136263 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00013 1 122 Cytoplasmic Ribosomal Protein Gene Family AT3G09500 89.344 4.44e-73 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00013 K02918 - gmx:100789845 226.483