Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g03199 ATGTCATCTTCTTCTTCTCCTTTGAATGCTCATTGCCAAGTCAAGTCCATTGTGGAGCGGGTGCTTGCAATGAGTGACATGAGAAGTGATAATCTGGGTTATTCCCCAGCGGTTGATATAACAGGCAAGATAATGGTGGTGGTCATAATAATTCTGTTCTTGATTGTTGTGACTTTTGTTTTCTTCCATCTTTATGCGAAAGGAATCTGGTGGAGTGACACAATCCAGAACAATTCCCAATCACAGCGTCCACAACAAAGAGGAGGAGGAAGTGGGCTTGATCCTGAGCTACTAAAGTCCCTACCCGTAACGGTATACCAATCAGATGGTTTGGAATTAATGGAGTGTGCTGTATGTCTATCGGAAGTAGTTGAAGGAGAAAAGGTGAGGATTTTGGGTAAATGCAACCACGTATTTCACGTTGATTGCATTGATATGTGGTTCCATTCCCATTCTACATGTCCTCTTTGCAGGACCACTGTTGAACCCTTTCAAGAATTACAATTACCATTGTCTTCTTCTTCGTCTACTTTTCCCACAAATGTCTTGATTTGGGGCAACCACAACAACAACCAAATAATTACTAGTAGCTCTTCTACTACTGCTTCTGCTTCTTTCGAAGAAAACAAAACTGCTTCTACTTCTGCTTCCTCCTCCTCATTAGGAGAAAGTGGTCGTGATAATGGAATATTAGTAATTGATATACCCAAtgactgtgaacgtgattatgagtgtgaggtgagttcatcatcgtcatcttcgtcgccgtcgccgtcAACAGGAGGAGGAGGGAGACTGAGATCATTGAAGAGGCTTTTAAGCAGCAGCAGAGGGATAATGAGCCTAAACCCTTGGAGTCCAACTTCCACTTCTACTTCTACCGATGTCAAACAAGCTAAGCCAAGCAGCCGGTCCTAG 918 0.3943 MSSSSSPLNAHCQVKSIVERVLAMSDMRSDNLGYSPAVDITGKIMVVVIIILFLIVVTFVFFHLYAKGIWWSDTIQNNSQSQRPQQRGGGSGLDPELLKSLPVTVYQSDGLELMECAVCLSEVVEGEKVRILGKCNHVFHVDCIDMWFHSHSTCPLCRTTVEPFQELQLPLSSSSSTFPTNVLIWGNHNNNQIITSSSSTTASASFEENKTASTSASSSSLGESGRDNGILVIDIPNDCERDYECEVSSSSSSSSPSPSTGGGGRLRSLKRLLSSSRGIMSLNPWSPTSTSTSTDVKQAKPSSRS 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g03199 305 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 28 280 IPR044675 -
Car03g03199 305 MobiDBLite consensus disorder prediction 245 305 - -
Car03g03199 305 MobiDBLite consensus disorder prediction 246 262 - -
Car03g03199 305 MobiDBLite consensus disorder prediction 274 305 - -
Car03g03199 305 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 164 IPR013083 -
Car03g03199 305 MobiDBLite consensus disorder prediction 205 225 - -
Car03g03199 305 CDD RING-H2_EL5_like 115 158 - -
Car03g03199 305 Pfam Ring finger domain 115 158 IPR001841 -
Car03g03199 305 ProSiteProfiles Zinc finger RING-type profile. 116 158 IPR001841 -
Car03g03199 305 MobiDBLite consensus disorder prediction 205 229 - -
Car03g03199 305 PANTHER RING-H2 FINGER PROTEIN ATL3 28 280 - -
Car03g03199 305 SMART ring_2 116 157 IPR001841 -
Car03g03199 305 SUPERFAMILY RING/U-box 103 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g03199 Car-Chr3 76609339 76610409 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g03199 30 304 Rapid Response to Elicitors AT3G16720 33.224 8.35e-38 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g03199 - - mtr:MTR_7g117540 223.016