Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g03194 ATGACGATTATGGGCGGCAGCAACAAGGTTGGAGAGTTTGGGGACACAACGCTGACCAAAGTGTTCGTGGGAGGTTTGGCCTGGGAGACTCCCAAAGACACACTTAGAGAACACTTCCAGAAGTACGGCCACATACTTGAAGCTGTCATCATCTCCGATAAGCTTACGGGGAGATCCAAAGGCTACGGCTTTGTAACATTCAAGGAAGCAGAGGCGGCTAAGAAGGCTTGCGAAGAACCAACGGTGATGATCAATGGTCGACGAGCAAACTGCAATCTGGCATCACTCGGTGCTCGCCGACCAATTATTAGGACGTCTTCTCCTCAAGAATATTCAGTAACAAAGAACCgcagcaacagcagcagcaaccaccagcagcagcCTCAGTGGTATTATCCCACACCCACACCTCCTTCCACATTCCATCATCACTTTCCTTTCTACGGGTACACGCCCCCCACATACATTGCAACAGATATGaattacaattacaattacaattacaatCAGAAGGTGAGGTATGTGTATCCAAGGCAGATGCCGGTGATATACCACCACCACCAGTACCCTATCTACCACACAACCACGGAGGCTATGGGTGTCCCTGCACCTCAATTCTTCCCCGCTCCATCCATCATTCCTACTACAGGTCCAGTTGGCACAGGTGAATGCTTCAAAAGGGTGGTGTGA 690 0.4594 MTIMGGSNKVGEFGDTTLTKVFVGGLAWETPKDTLREHFQKYGHILEAVIISDKLTGRSKGYGFVTFKEAEAAKKACEEPTVMINGRRANCNLASLGARRPIIRTSSPQEYSVTKNRSNSSSNHQQQPQWYYPTPTPPSTFHHHFPFYGYTPPTYIATDMNYNYNYNYNQKVRYVYPRQMPVIYHHHQYPIYHTTTEAMGVPAPQFFPAPSIIPTTGPVGTGECFKRVV 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g03194 229 SMART rrm1_1 20 92 IPR000504 GO:0003723
Car03g03194 229 MobiDBLite consensus disorder prediction 105 130 - -
Car03g03194 229 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 19 108 IPR000504 GO:0003723
Car03g03194 229 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 87 IPR000504 GO:0003723
Car03g03194 229 SUPERFAMILY RNA-binding domain, RBD 18 159 IPR035979 GO:0003676
Car03g03194 229 CDD RRM_RBM24_RBM38_like 19 94 - -
Car03g03194 229 PANTHER GEO13361P1-RELATED 1 212 - -
Car03g03194 229 Gene3D - 8 107 IPR012677 -
Car03g03194 229 MobiDBLite consensus disorder prediction 105 131 - -
Car03g03194 229 PANTHER RNA-BINDING PROTEIN ARP1-RELATED 1 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g03194 Car-Chr3 76560024 76566282 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g03194 15 151 C2H2 Transcription Factor Family AT2G19380 31.613 1.70e-16 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g03194 - - cam:101503379 412.92