Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g03192 ATGACGGAGGATGCGAATGCGAACGCGaatgcgaatgctaatgctaatgctaatgctaatgctTCCTCCCCCTCTTACTGGCTCGATGCTTGCGAAGACATCTCTTGCGATTTCATTGATTTTGATCTTTCTTCAATTGACCACTCACCCGataataacaataataataataataatcatGACTTTTTTGGTGGAATTGATCGAATCTTAGACAGCTTCAAGAACGGTGCTGGCCTCCCTCTTCACACTTCCTCTCATCCTAACACTAACCTCTCAAATCCTACTATTCAACAACACCATGCTTTGCTCAACAACACTAACACTAACACTAACACACTTCATCATCATGATCATCCCAAAAGGCCTCGCCTTTCCCCATTCAACAATAATCAAAACCCTTTCTATGCTACACTCAATCATCAACCCAACAAGGACGCCTCTTTCAATAACAGGAAGAAGAGGCCAAGAGATCATTCTGATACTGACATTGATAGGAAAACTAGGAGAGATGTTAGAGAACAAAGAGGTTACTGGGAGAGGGATAAGTCCTCTGCTTCCAATCACTTAGTCTTTCGATTGGGTACTTGGGAACCTGATCCTATTCGCCAACACAAAATCCACAATCACATCAAACAGGAGGACGAACACAATCATAACACTTCTCATGATAAGCCTAAGGAAAAGGTTCCTGAGGAAAAAGCCAGACAGTATCAGTTGGATGTTCTTCACCAGGCCAAGACCAGAAATACCATAGCTTTTCTTGAAACCGGAGCTGGAAAAACCCTCATCGCAGTTCTTCTCATTAAATCTATACAGGAGACTTTACATAAGCAGAATAAGAAAATGCTTGCAGTGTTTTTGGTTCCAAAAGTTCCACTTGTTTACCAGCAAGCTGAAGTCATCCGTGAGCGGACTGGATATCAAGTGGGGCACTATTGTGGAGAAATGGGGCAGGATTTCTGGGATGCTCGAAGATGGCAGCGTGAATTTGACACTAAGCATGTTTTAGTCATGACTGCTCAAATACTTTTGAACATTTTGAGGCATAGCATAATAAAAATGGAAGCAATCAATCTTCTGATTCTGGACGAGTGCCATCATGCTGTGAAGAAACACCCTTATTCGCTGGTGATGTCTGAGTTCTACCATACAACACCCAAAGAAAAGAGGCCATCCGTATTTGGAATGACTGCTTCTCCTGTTAATTTGAAGGGTGTATCCAGCCAAGTAGATTGTGCAATAAAAATTCGTAATCTTGAAAGTAAGCTAGATTCAATAGTTTGTACCATTAAAGATCGTAAAGAGCTGGAGAAACATGTGCCCATGCCCTCTGAGATTGTGGTGGAGTATGATAAAGCGGCCAGTCTATGTTATTTACATGAGCAGATAAAGCAGATGGAGACTGAAGTTGAGGAAGCTGCAAAATCTAGTTCAAGAAGAAGCAAATGGCAGTTTATGGGAGCTAGAGATGCTGGATCTAAGGAAGAGCTGCGCCAAGTATATGGTGTTTCTGAAAGAACAGAAAGTGATGGAGCTGCAAACCTAATTCAGAAGTTGAGAGCTATTAATTATGCACTCGGTGAACTGGGACAGTGGTGTGCATATAAGGTTGCACAATCTTTTCTTGCAGCTCTGCAAAATGATGAAAGGGCAAACTACCAACTTGATGTCAAGTTTCAGGAATCTTATCTGAGCAAAGTTGTATCTCTTTTGAAATGTCAACTGTCAGAGGGTGCCGTTTCTGAGAAAAATGTTGGAGTTGATGACTCAGAGAATGGCGCGGCTCACAGTGGGTCTGACGAACACGAAGAGATTGAAGAAGGAGAGCTTCCGGATAGTCACGTCGTCTCTGGTGGGGAGCACGTGGATGTCATAATAGGTGCTGCTGTGGCTGATGGCAAGGTGACCCCTAAGGTGCAGGCTTTAATCAAGATACTCCTCAAGTATCAGAACACAGACGACTTCCGTGCAATCATCTTTGTTGAGCGTGTTGTCTCTGCATTAGTTCTACCCAAGGTTTTTACTGAGCTTCCATCGCTTAGTTTTGTGAAGTGTGCAAGCTTGATTGGTCACAACAATAGTCAGGAAATGCGGACCCACCAAATGCACGATACAATTGCAAAGTTCCGTGATGGGCGCGTTACGTTGTTAGTCGCCACAAGTGTTGCTGAGGAAGGACTTGATATCCGACAATGTAATGTTGTTATTCGCTTTGATCTTGCAAAGACTGTTCTGGCATACATTCAGTCTAGGGGACGTGCTAGAAAGCCTGGGTCTGATTACATCCTAATGGTTGAGAGGGGAAATTTATCCCATGAAGCATTCCTAAGGAATGCCAGGAATAGTGAGGAAACTTTGCGGAGAGAAGCAATAGAGAGAACTGACCTTAGTCATCTGAAAGACACTTCAAGGTTGATTTCTGTAGATACCCATCCAGAAACAATTTATCAGGTGAAATCTACTGGTGCAGTAGTTAGCTTAAATTCTGCTGTAGGTCTTGTTCACTTCTACTGCTCTCAGCTACCTAGTGACAGATATTCGATTCTTCGTCCGGAGTTTATTATGGAGAAGCATGAAAAATCTGGAGTTTCCACTGAATATTCATGCAAGCTTCAACTGCCGTGTAATGCGCCATTTGAAAACCTGGAGGGTCCTATCTGCAGTTCAATGCGCTTGGCACAACAGGCATCTGCTTGCAAAAAATTGCACGAGATGGGAGCATTCACTGATATGCTATTGCCTGATAAAGGAAGTGGGGGGGAAAGAGAAAAGGCTGAACAAAATGATGAAGGGGATGCAGTTCCAGGGACTGCTAGACATAGGGAGTTCTATCCTGAAGGTGTGGCCGACATACTGAAGGGAGAATGGATTGTATCTGGAAAAGATGCTTGCAACGACTCCAAGTTGTTTCATCTTTATATGTATACCATAAAGTGCGAAAATTTAGGCCATTCAAAGGATCCATTCTTGAATCAGATTTCAGATTTTGCCGTACTTTTTGGCAATGAGCTGGATGCAGAGGTAGTGTTATCGATGTCGATGGATCTATTTATCGCTCGAACCGTGACTACAAAGGCATCTCTTGTCTTTAGAGGGTCAATAGATATAACTGAGAGTCAGTTGTCTTCCCTGAAAAGCTTTCATGTAAGATTAATGAGCATTGTCTTGGATGTGGATGTTGAACCATCTACCACTCCTTGGGATCCTGCAAAAGCATATTTGTTTGCCCCAATGGTTGGCGATAAGTCTTTAGATCCTATGAACCAAATTGACTGGCATCTGGTTGAGACAATAATTGGAGCCGATGCATGGAAAAATCCCCTCCAGAAGGCTCGACCAGATGTTTACCTTGGTACTAATGAGAGAACTTTAGGTGGCGATAGAAGGGAGTATGGATTTGGGAAATTGCGTCATGGCTTGGCTTTTGGGCAAAAATCACATCCAACCTATGGAATCAGAGGAGCGGTGGCCCAGTTTGATGTGGTGAAAGCTTCAGGATTGGTTCCTCACAGAGATTCCATGCAAACACAAAAGCCTATCAACATGACTACTGCCAAAGGAAAACTGATGATGGCAGATACCTGTACTAGTGCAGAGGATCTGGTAGGGAGAATTGTAACTGCTGCTCATTCAGGGAAGAGGTTTTATGTTGATTCAATACGCTATGAAATGAAAGAAGGTTATCTTGGTCCTCTGGAGTACAGTTCTTATGCTGATTACTACAAGCAAAAATATGGTGTTGATTTAGTTTACAAGCAGCAACCTCTTATAAGAGGGCGTGGTGTATCATACTGCAAGAATCTATTGTCCCCTCGATTTGAACACAGCGAAGCACATGAAGGTGAATCTGAAGAGACTCATGACAAAACTTACTATGTTTTCCTTCCTCCTGAGCTATGCCTAGTACACCCACTGCCTGGATCACTCATTCGTGGTGCTCAAAGGCTGCCTTCAATAATGAGGAGGGTTGAAAGCATGCTTCTTGCTGTTCAGCTTAAGAATATGATAAACTATCCTGTTCAGTCTTTAAAGATCTTGGAGGCCTTGACCGCTGCCTCTTGCCAGGAGACATTCTGCTATGAGAGGGCAGAGCTTCTAGGAGACGCTTATCTGAAATGGGTTGTTAGTCGATTTCTTTTCCTAAAATATCCACAGAAACATGAAGGCCAGCTTACTAGGATGAGACAACAAATGGTCAGTAACATGGTATTATATCAGTATGCATTAAGTAAGGGTCTTCAATCATATATCCTAGCAGACCGCTTTGCCCCATCCAGATGGGCAGCTCCTGGGGTGTTGCCTGTCTTTGATGAGGATACAAAGGATGGGGAGTCATCTTTATTTGAGCAGGAGCAATCCATTTCTAAGACTGAAAGGATGGACAACACTGATGTATTTGAGGATGAAATGGAAGATGGTGAGCTTGAGAGTGATTCAAGTTCTTACCGAGTTCTGTCTAGCAAGACACTTGCGGATGTTGTGGAAGCACTGATTGGGGTATATTATGTCGAAGGTGGTAAGAATGCTGCTAACCACCTTATGAAATGGATTGGTATTCACATAGAGATTGATCCCGATGAGATGGAGTGTACAAGAAAGCCATCTGATGTTCCGGACAGCATACTTAGGAGTGTTGATTTTGATGCTTTAGAAGGTGCTCTAAATATTAGGTTTAAAGACAAGGGACTGCTGATAGAATCCATAACTCATGCCTCCAGACCATCTTCAGGAGTATCCTGTTATCAGCGGTTGGAGTTTGTTGGTGATGCTGTCTTGGATCATCTTATAACCAGGCACTTGTTTTTCTCGTACACAGATCTGCCACCAGGACGTCTGACTGACCTTCGTGCTGCTGCTGTAAACAATGAAAATTTTGCACGTGTTGCAGTTAAACACAATCTTCACATGCATTTGCGACATGGGTCCAGTGCCCTAGAAAAACAGATTAAAGAATTTGTGAAGGAAGTTCAAAATGAATTGTCAAAACCAGGGTTTAACTCGTTTGGTCTTGGAGACTGCAAAGCTCCTAAGGTCCTTGGTGACATCGTTGAATCTATTGCTGGTGCCATTTTTCTTGACAGTGGGAGGAATACTGCTGTTGTTTGGAAGGTTTTTCAGCCTCTTTTGCATCCTATGGTTACCCCAGAGACTTTGCCAATGCATCCTGTGCGTGAGCTGCAAGAGCGATGCCAGCAGCAGGCCGAAGGCTTGGAGTATAGAGCAAGTCGTGTTGGCAATTTGGCCACTGTTGAAGTATTCATTGATGGGGTACAAGTAGGGGCTGCTCAAAATCCACAGAAAAAAATGGCACAGAAATTAGCTGCCAGAAATGCTCTTGCAGCTTTGAAAGAGAAGGAAGTGGAGAAAATTCAGGAGAAGAATGATGAGAATGAGACAAAGAATGGGAACCAGACATTTACTAGACAGACATTAAATGACATCTGTTTGCGAAGAAATTGGCCTATGCCATTCTACCGGTGTGTGAGTGAGGGTGGTCCTGCACATGCAAAGAGGTTTACCTTCGCAGTGCGCGTCAATACTACTGATAAAGGTTGGACTGATGAATGTATTGGAGAGCCAATGCCAAGCGTCAAGAAGGCCAAAGACTCAGCTGCTGTTCTTCTCTTAGAACTTATAAACAAATTATACTCTTGA 5655 0.4278 MTEDANANANANANANANANASSPSYWLDACEDISCDFIDFDLSSIDHSPDNNNNNNNNHDFFGGIDRILDSFKNGAGLPLHTSSHPNTNLSNPTIQQHHALLNNTNTNTNTLHHHDHPKRPRLSPFNNNQNPFYATLNHQPNKDASFNNRKKRPRDHSDTDIDRKTRRDVREQRGYWERDKSSASNHLVFRLGTWEPDPIRQHKIHNHIKQEDEHNHNTSHDKPKEKVPEEKARQYQLDVLHQAKTRNTIAFLETGAGKTLIAVLLIKSIQETLHKQNKKMLAVFLVPKVPLVYQQAEVIRERTGYQVGHYCGEMGQDFWDARRWQREFDTKHVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTPKEKRPSVFGMTASPVNLKGVSSQVDCAIKIRNLESKLDSIVCTIKDRKELEKHVPMPSEIVVEYDKAASLCYLHEQIKQMETEVEEAAKSSSRRSKWQFMGARDAGSKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAQSFLAALQNDERANYQLDVKFQESYLSKVVSLLKCQLSEGAVSEKNVGVDDSENGAAHSGSDEHEEIEEGELPDSHVVSGGEHVDVIIGAAVADGKVTPKVQALIKILLKYQNTDDFRAIIFVERVVSALVLPKVFTELPSLSFVKCASLIGHNNSQEMRTHQMHDTIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMVERGNLSHEAFLRNARNSEETLRREAIERTDLSHLKDTSRLISVDTHPETIYQVKSTGAVVSLNSAVGLVHFYCSQLPSDRYSILRPEFIMEKHEKSGVSTEYSCKLQLPCNAPFENLEGPICSSMRLAQQASACKKLHEMGAFTDMLLPDKGSGGEREKAEQNDEGDAVPGTARHREFYPEGVADILKGEWIVSGKDACNDSKLFHLYMYTIKCENLGHSKDPFLNQISDFAVLFGNELDAEVVLSMSMDLFIARTVTTKASLVFRGSIDITESQLSSLKSFHVRLMSIVLDVDVEPSTTPWDPAKAYLFAPMVGDKSLDPMNQIDWHLVETIIGADAWKNPLQKARPDVYLGTNERTLGGDRREYGFGKLRHGLAFGQKSHPTYGIRGAVAQFDVVKASGLVPHRDSMQTQKPINMTTAKGKLMMADTCTSAEDLVGRIVTAAHSGKRFYVDSIRYEMKEGYLGPLEYSSYADYYKQKYGVDLVYKQQPLIRGRGVSYCKNLLSPRFEHSEAHEGESEETHDKTYYVFLPPELCLVHPLPGSLIRGAQRLPSIMRRVESMLLAVQLKNMINYPVQSLKILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQYALSKGLQSYILADRFAPSRWAAPGVLPVFDEDTKDGESSLFEQEQSISKTERMDNTDVFEDEMEDGELESDSSSYRVLSSKTLADVVEALIGVYYVEGGKNAANHLMKWIGIHIEIDPDEMECTRKPSDVPDSILRSVDFDALEGALNIRFKDKGLLIESITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFSYTDLPPGRLTDLRAAAVNNENFARVAVKHNLHMHLRHGSSALEKQIKEFVKEVQNELSKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRNTAVVWKVFQPLLHPMVTPETLPMHPVRELQERCQQQAEGLEYRASRVGNLATVEVFIDGVQVGAAQNPQKKMAQKLAARNALAALKEKEVEKIQEKNDENETKNGNQTFTRQTLNDICLRRNWPMPFYRCVSEGGPAHAKRFTFAVRVNTTDKGWTDECIGEPMPSVKKAKDSAAVLLLELINKLYS 1884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g03192 1884 CDD RIBOc 1563 1718 IPR000999 GO:0004525|GO:0006396
Car03g03192 1884 ProSiteProfiles Ribonuclease III family domain profile. 1347 1506 IPR000999 GO:0004525|GO:0006396
Car03g03192 1884 Gene3D paz domain 1190 1302 - -
Car03g03192 1884 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1806 1877 - -
Car03g03192 1884 MobiDBLite consensus disorder prediction 124 145 - -
Car03g03192 1884 Pfam Ribonuclease III domain 1582 1695 IPR000999 GO:0004525|GO:0006396
Car03g03192 1884 Pfam Ribonuclease III domain 1361 1506 IPR000999 GO:0004525|GO:0006396
Car03g03192 1884 Gene3D Ribonuclease III domain 1543 1716 IPR036389 GO:0004525|GO:0006396
Car03g03192 1884 Gene3D Ribonuclease III domain 1325 1521 IPR036389 GO:0004525|GO:0006396
Car03g03192 1884 Gene3D Dicer dimerisation domain 825 923 IPR038248 -
Car03g03192 1884 CDD SF2_C_dicer 635 765 - -
Car03g03192 1884 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 641 802 IPR001650 -
Car03g03192 1884 Gene3D - 228 473 IPR027417 -
Car03g03192 1884 MobiDBLite consensus disorder prediction 146 184 - -
Car03g03192 1884 CDD DSRM_DCL_plant 1812 1881 - -
Car03g03192 1884 Pfam PAZ domain 1197 1324 IPR003100 GO:0005515
Car03g03192 1884 Gene3D - 628 794 IPR027417 -
Car03g03192 1884 MobiDBLite consensus disorder prediction 585 613 - -
Car03g03192 1884 SMART PAZ_2_a_3 1173 1328 IPR003100 GO:0005515
Car03g03192 1884 SMART DRBM_3 1722 1783 IPR014720 -
Car03g03192 1884 SMART DRBM_3 1807 1880 IPR014720 -
Car03g03192 1884 MobiDBLite consensus disorder prediction 106 184 - -
Car03g03192 1884 ProSiteProfiles Ribonuclease III family domain profile. 1547 1695 IPR000999 GO:0004525|GO:0006396
Car03g03192 1884 Coils Coil 1879 1884 - -
Car03g03192 1884 Coils Coil 1780 1800 - -
Car03g03192 1884 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 830 922 IPR005034 GO:0016891
Car03g03192 1884 Pfam Helicase conserved C-terminal domain 638 755 IPR001650 -
Car03g03192 1884 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 241 418 IPR014001 -
Car03g03192 1884 PANTHER DICER-RELATED 195 1882 - -
Car03g03192 1884 SMART helicmild6 668 757 IPR001650 -
Car03g03192 1884 SMART riboneu5 1343 1525 IPR000999 GO:0004525|GO:0006396
Car03g03192 1884 SMART riboneu5 1562 1718 IPR000999 GO:0004525|GO:0006396
Car03g03192 1884 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1721 1784 IPR014720 -
Car03g03192 1884 CDD DEXHc_dicer 233 432 - -
Car03g03192 1884 Pfam DEAD/DEAH box helicase 238 399 IPR011545 GO:0003676|GO:0005524
Car03g03192 1884 PANTHER ENDORIBONUCLEASE DICER HOMOLOG 1 195 1882 - -
Car03g03192 1884 Gene3D - 1812 1881 - -
Car03g03192 1884 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1806 1881 IPR014720 -
Car03g03192 1884 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 281 769 IPR027417 -
Car03g03192 1884 SUPERFAMILY dsRNA-binding domain-like 1810 1879 - -
Car03g03192 1884 SUPERFAMILY RNase III domain-like 1546 1716 IPR036389 GO:0004525|GO:0006396
Car03g03192 1884 ProSiteProfiles PAZ domain profile. 1171 1304 IPR003100 GO:0005515
Car03g03192 1884 MobiDBLite consensus disorder prediction 594 613 - -
Car03g03192 1884 SUPERFAMILY RNase III domain-like 1320 1524 IPR036389 GO:0004525|GO:0006396
Car03g03192 1884 SUPERFAMILY dsRNA-binding domain-like 1677 1804 - -
Car03g03192 1884 SMART ultradead3 230 433 IPR014001 -
Car03g03192 1884 MobiDBLite consensus disorder prediction 916 937 - -
Car03g03192 1884 SUPERFAMILY PAZ domain 1190 1304 IPR036085 GO:0005515
Car03g03192 1884 Pfam Dicer dimerisation domain 830 915 - -
Car03g03192 1884 ProSitePatterns Ribonuclease III family signature. 1582 1590 IPR000999 GO:0004525|GO:0006396
Car03g03192 1884 Gene3D - 1719 1797 - -
Car03g03192 1884 CDD RIBOc 1345 1522 IPR000999 GO:0004525|GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g03192 Car-Chr3 76527185 76538726 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g03192 654 797 Eukaryotic Initiation Factors Gene Family AT5G11200 28.571 6.04e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g03192 K11592 - gmx:100811631 3199.84