LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car03g03190	ATGGAGGCATACTCCTCTGGAGAAGAAGTGGTTGTCAAGACAAGAAAACCATATACAATCACAAAGCAAAGAGAACGATGGACAGAGGATGAACATAATAGATTTCTAGAAGCCCTCAAGTTATATGGCCGAGCATGGCAGCGCATAGAAGAGCATATAGGAACGAAGACTGCTGTGCAAATAAGGAGCCATGCCCAAAAATTCTTTTCAAAGTTGGAGAAGGAAGCACTAGTAAAAGGTGCTGCAATAGGACAATCTCTTAACATAGACATCCCCCCTCCACGGCCCAAAAGAAAACCAAGTAATCCTTATCCTCGCAAGACCAATGTTGGTGCTCCAACATTACACAGTGGAGCAAAGTATGGAAAGCCTCTTACTGCATTTGCATCTTTACATGGTAAAGAAGCAATGGATTTTGAGAAAGAATCGCTTCCAGAGATGCATACAGATGATGAAAGGCCAACAACTGTAAAAGAAAATAACGATGAAAATTGCTCAAAAGTATGTACAATCCTCCAGGAGGCACCCTGTTTATCTGTATCTTCAGCAAATAAGAGTTCAATCTCAATGTCAGTGCCACAGACAAAATCCTTCACCTTTAGGGAGTTTATACCTTTAGTGAAAGAGGTAATACCTCAAGACAAAACAAATGAATCTTTTCCGGCAACTGAGACTGAAAATCAGATGTTGGAGATTGGTGATGGAAAACAAACACAAAAGACTGATGGCACTTGTAAAACGTCTAAGTTAGAGAATACTTGTTCTCCCAAATCAGTTCAAACTGAGAAAACAGATGGTTTAACTTATGCATCAACAGTAGATGAGATGCAAGGTAATCAGAATTACCCAAGACATATTACTGTGCACGTTGTTGACGGGAACCTTGGAACTAGTACTCAAACTCCATCACAAGATATGTTGATACAAGACTCCATATTTCAGCCAATAGGAGGGATTAATGGGCAACCTAATCTTTTCACAAATTCAGCTGCATCAAACACAAGTGAAAGTCAAAATAACACAGCACGATCTTCTATTCATCAATCATTTCCTCCCTGTCCTCTCTTCGCACAACATAATGAGGATGATTACCAATCATTTCTCAACATGCCTTCTACATTTTCAAGCCTCATTGTCTCTACCTTGCTGCAACACCCTGCAGCCCATGCTGCTGCAAGTTTTGCTGCTACATTTTGGCCCTATGCAAATGTTGATACTTCAGCCAATTCTCATGCCTGCTCTCAAGGAGGTTTTCCATCTAGACAAATTGGTTCACCTCCTAGTGTAACAGCTATTGCAGCTGCTACAGTAGCTGCTGCAACTGCATGGTGGGCAGCTCATGGACTTCTTCCTTTGTGCACTCCACTCCATACAGCTTTTGCCTGTCCTCCTGCATCAGCAACTGCAGTTCAACCAGCGAATATTGGTGAAGCACCACCAAATACAGAGCAAGGAGATATTACACTACAAAATCCTTCTCTGAAAGATCAGATGTTAGGTGTAGAAGAGACGGAAGCTTTGCAAGCTCAACATTCAGCTTCTAAGTCACCAGCTGTTTCTTCATCTGAATCAGAGGAAACTGGAGATGCCAAGTTAAATACTTCATCAAAGGCCACTACTGATCATGATATAAGCCAACCGATTTCTGAGAACCCTGACTCCAACAAAATGGAGGGCAGAAAACAGGTAGACCGGTCTTCTTGTGGTTCCAACACAACCTCTAGCAGTGAAGAGACTGATGCGTTGGAGAAGGGTGAGAAAGAAAAGGAAGACCCCAAGCCACCTGATGCTGACCATTTAGCTACTGATCCTAGTAGTCGTCGATATAGAAGCATTAGCAACTTTATTGATTCTTGGAAGGAGGTCTCTGAAGAGGGACGACTTGCCTTTCGGGCTCTATTCTCCAGGCAGGTGTTGCCCCAAAGCTTTTCACCTCCCCATGATTTGATAAATAAGGATCATCAGATGGGCAACATGACGGATAACATGCAAAAAACAGACTACAAAGATCACCTTGACAGCACGAAATGCAGTTCTAATTGTGACGGGTTTCAGCAAAACCTACCATTTGTACAAAATAACAATGAGGAGGAGGGACTGCTAACCATAAGTCTTGGACAAGGTAAGCTTAAGACTCGTCGAACAGGGTTTAAACCTTACAAAAGATGTTTAGTAGAGGCCAAGGAAAACAGGGTCGGAACGGCGTGCAACCAAGTTGAAGAGGCTGGTCCTAAGAGGATACGCCTGGAAGGGGAAACTTCTACTTGA	2268	0.4264	MEAYSSGEEVVVKTRKPYTITKQRERWTEDEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSKLEKEALVKGAAIGQSLNIDIPPPRPKRKPSNPYPRKTNVGAPTLHSGAKYGKPLTAFASLHGKEAMDFEKESLPEMHTDDERPTTVKENNDENCSKVCTILQEAPCLSVSSANKSSISMSVPQTKSFTFREFIPLVKEVIPQDKTNESFPATETENQMLEIGDGKQTQKTDGTCKTSKLENTCSPKSVQTEKTDGLTYASTVDEMQGNQNYPRHITVHVVDGNLGTSTQTPSQDMLIQDSIFQPIGGINGQPNLFTNSAASNTSESQNNTARSSIHQSFPPCPLFAQHNEDDYQSFLNMPSTFSSLIVSTLLQHPAAHAAASFAATFWPYANVDTSANSHACSQGGFPSRQIGSPPSVTAIAAATVAAATAWWAAHGLLPLCTPLHTAFACPPASATAVQPANIGEAPPNTEQGDITLQNPSLKDQMLGVEETEALQAQHSASKSPAVSSSESEETGDAKLNTSSKATTDHDISQPISENPDSNKMEGRKQVDRSSCGSNTTSSSEETDALEKGEKEKEDPKPPDADHLATDPSSRRYRSISNFIDSWKEVSEEGRLAFRALFSRQVLPQSFSPPHDLINKDHQMGNMTDNMQKTDYKDHLDSTKCSSNCDGFQQNLPFVQNNNEEEGLLTISLGQGKLKTRRTGFKPYKRCLVEAKENRVGTACNQVEEAGPKRIRLEGETST	755

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car03g03190	755	MobiDBLite	consensus disorder prediction	86	118	-	-
	Car03g03190	755	MobiDBLite	consensus disorder prediction	579	605	-	-
	Car03g03190	755	MobiDBLite	consensus disorder prediction	507	553	-	-
	Car03g03190	755	Pfam	Myb-like DNA-binding domain	24	67	IPR001005	-
	Car03g03190	755	SUPERFAMILY	Homeodomain-like	18	74	IPR009057	-
	Car03g03190	755	MobiDBLite	consensus disorder prediction	564	578	-	-
	Car03g03190	755	Gene3D	-	26	73	-	-
	Car03g03190	755	PANTHER	PROTEIN LHY	2	737	-	-
	Car03g03190	755	ProSiteProfiles	SANT domain profile.	22	73	IPR017884	-
	Car03g03190	755	MobiDBLite	consensus disorder prediction	327	346	-	-
	Car03g03190	755	PANTHER	SWI/SNF COMPLEX-RELATED	2	737	-	-
	Car03g03190	755	MobiDBLite	consensus disorder prediction	219	247	-	-
	Car03g03190	755	SMART	sant	23	71	IPR001005	-
	Car03g03190	755	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	19	73	IPR017930	-
	Car03g03190	755	ProSiteProfiles	Myb-like domain profile.	19	69	IPR001005	-
	Car03g03190	755	MobiDBLite	consensus disorder prediction	506	605	-	-
	Car03g03190	755	CDD	SANT	26	69	IPR001005	-
	Car03g03190	755	TIGRFAM	myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class	22	71	IPR006447	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Car03g03190	Car-Chr3	76515711	76523013	Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB-related	Car03g03190		Myb_DNA-binding	7.9e-13	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car03g03190	K12133		-	gmx:780540	1021.15