Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g03179 ATGGCTGCTAACTGTACAACAATTCCTCTCTCTTTGGCCACAACTTGTTCCTCCTCGTTATTACTTGGAACTAAGGCAAAACGATTCGTTTATTTTTCAAAGGTGCCTTATCCTTTTTTGTCGTTTCTTGTTACGGCTCGCAGCTCCAAGCCTAAGGTTTCCACTGACTTCGCGGCTGCCGTCAATGGAGACGACGTCGTTTCCTCGGAGGAGGAACCGGTGAAGCTGGGAAATCCAACCCAAGTTTATGTTTGCAACCTTCCAAGAAGTTGGGACACTGAACAACTACTTCATTTGTTCACTCCTCACGGAACCGTTTTATCTGTAGAGGTTTGCCGGAATGTGGAGAGTGGTGAGAGTAAAGGGAGTGCTTATGTCACGATGAGATCTTATAACACTGCCAAAACTGCAATTGCTGCATTGGATGGATTGGATGTTGGTGGACGCGAAATGCGGGTTAAATTTTCATTTCAGATGAATTCTAAGAAGAAAGGTTTAGAGACATTAAACTCGCCGCCCGCGAGAACTATATACTATGAAGGTCCTCATAAGGTGTATGTTGGGAATCTTTCTAGGTCTGCTACACCTGAAGACGTGAGACATTTGTTTGGTAGATTTGGAAATGTGGCTAGTGTGAGGGTGTTGCAAGATTTGAAAATGGGGAAAAGCCGCGTCTATGCCTTTGTCTCTTATCTTTCTCAGACAGAACGCGATGCCTCTATGTCCCTCAATGGAACTGAATTTTGTGGTCGAATTCTAGTGGTTAGAGAGGGCGTTGAGAAGACTGAGACCTAA 795 0.4465 MAANCTTIPLSLATTCSSSLLLGTKAKRFVYFSKVPYPFLSFLVTARSSKPKVSTDFAAAVNGDDVVSSEEEPVKLGNPTQVYVCNLPRSWDTEQLLHLFTPHGTVLSVEVCRNVESGESKGSAYVTMRSYNTAKTAIAALDGLDVGGREMRVKFSFQMNSKKKGLETLNSPPARTIYYEGPHKVYVGNLSRSATPEDVRHLFGRFGNVASVRVLQDLKMGKSRVYAFVSYLSQTERDASMSLNGTEFCGRILVVREGVEKTET 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g03179 264 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 183 260 IPR000504 GO:0003723
Car03g03179 264 SUPERFAMILY RNA-binding domain, RBD 79 260 IPR035979 GO:0003676
Car03g03179 264 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 63 263 - -
Car03g03179 264 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 185 252 IPR000504 GO:0003723
Car03g03179 264 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 152 IPR000504 GO:0003723
Car03g03179 264 Gene3D - 165 264 IPR012677 -
Car03g03179 264 Gene3D - 45 164 IPR012677 -
Car03g03179 264 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 80 158 IPR000504 GO:0003723
Car03g03179 264 PANTHER OS02G0815200 PROTEIN 63 263 - -
Car03g03179 264 SMART rrm1_1 184 256 IPR000504 GO:0003723
Car03g03179 264 SMART rrm1_1 81 154 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g03179 Car-Chr3 76465518 76466605 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g03179 66 263 Eukaryotic Initiation Factors Gene Family AT1G22760 26.633 5.40e-16 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g03179 - - gsj:114400287 278.87