Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g03175 ATGGGTGCGAATGCAAAAAACTGGGGTGGGGTAGCAATATCCGAACGGCATACCGGAACACATTTCACTCTTCTGTCGTCTCCGATCTTATTCCCTTCCTGTGTAAAAATGTCGATTGGAGAGACTGCTTGCTCCTACGCCCTTCTCATCCTTGAAGATGATAAAATCCCCGCAACTGCTGACAACATCACCACCTTGTTGAAAAGTGCAAAGGTAGAAGTAGAATCGTTTTGGCCCAGCTTATTTGCCAAGCTTGCTGAGAAGAAAAATATTAGGGATTTGATTTCcagtgctgctggcggtggagctccagtcaccgttgccgcagctccagttgctgctgcaggtggtgctgcggctgccgctgctccagcagctgAGGAGAAGAAGAAGGAAGAACCAGCAGAAGAGAGTGACGATGACATGGGCTTTAGCTTGTTTGATTAG 447 0.3535 MGANAKNWGGVAISERHTGTHFTLLSSPILFPSCVKMSIGETACSYALLILEDDKIPATADNITTLLKSAKVEVESFWPSLFAKLAEKKNIRDLISSAAGGGAPVTVAAAPVAAAGGAAAAAAPAAEEKKKEEPAEESDDDMGFSLFD 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g03175 148 CDD Ribosomal_P1 41 147 - -
Car03g03175 148 MobiDBLite consensus disorder prediction 123 148 - -
Car03g03175 148 Hamap 50S ribosomal protein L12 [rpl12]. 42 148 IPR027534 GO:0003735|GO:0005840|GO:0006414
Car03g03175 148 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN 37 140 - -
Car03g03175 148 Gene3D - 37 98 IPR038716 -
Car03g03175 148 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 37 140 - -
Car03g03175 148 Pfam 60s Acidic ribosomal protein 59 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g03175 Car-Chr3 76444602 76451457 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g03175 37 148 Cytoplasmic Ribosomal Protein Gene Family AT5G24510 54.386 8.99e-33 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g03175 K02942 - zju:107423779 117.087