Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g03170 ATGTCAGAAGGTGCAGAGATTGACGAGCGTGTTGACCTTGATGAGGAAAACTACATGGAAGAAATGgatgatgatgttgaggaacagatagatgatgatggagttgatggaggcgaagatgataatgctgaAGGTAGTGTCGAAGAACATGAATATGAAGAGTCAGCAGCGGCAGAGGCTGGTCGGAAAGACCAATTTCTCGATGCTGAAAAAAGTGACCTTGCCACGGAAGAAGATGAGCAAAAACCATCTCTCATTGATGAAGAAGAGAAAGAGAAGCATGATGAACTTCTTGCTCTTCCTCCTCATGGTTCTGAAGTCTTTATTGGTGGACTTCCTCGTGATACGTGTGAAGATGACTTAAGGGAACTGTGTGAGCCAATGGGGGATATTGTTGAGGTTCGGTTAATGAAAGACAGGGACACCGGAGAAAGCAAGGGTTATGCTTTTGTGGCGTTTAAAACAAAAGAGGTGGCACAGAAGGCCATCGATGATTTACATAGCAAGGAATTTAAGGGTAAAACTTTGAGGTGTTCGCTGTCTGAAACCAAACACAGATTATTCATTGGTAATGTTCCAAAGACATGGTCAGAGGATGAGTTTAGGAAAGTTGTTGAGGGTGTTGGTCCTGGAGTTGAAAGCATTGAGCTCATAAAGgaccctcaaaatccaagcagaaatcgtgggtttgcttttgttttgtattacaacaatgcatgtgctgattattcacggcaaaagatgtcaagttcgagtttcaagcttgatggaaatacaccaactgtcacctgggcagatccaaaggccacacctgaccattctgctgcctcttcacagGTGAAAGCTCTATATGTGAAAAACATACCTGAGAATGTTACTACTGACCAACTAAAAGATCTATTTCGCCGTCATGGGGAAGTAACAAAAGTGGTCATGCCACCCGGCAAAGTTGGAGGGAAACGTGATTTTGGTTTCATTCATTATGCAGAGAGGTCAAGTGCATTGAAAGCTGTAAAAGAGACAGAGAAATATGAAATTGACGGCCAAGCTCTTGAAGTTGTTCTTGCCAAGCCTCAAGCTGAAAAAAAACCTGATGGTGGCTATGCCTACAATCCTGGTCTCCACCCTAACCATCTTTCACATCCTGGTTATGGTAACTTTTCTGGAAATCTTTATGGCTCTGTAGGGGCTGGGTATGGTGTTGCTGCTGGTTATCAACAGCCAATGATATACGGTAGGGGTCCAATGCCGGCAGGGATGCAGATGATGGTTCCAATGGTTTTACCAGATGGTCGAATTGGCTATGTCCTTCAACAACCTGGTGTACAGGTGCCAGCTACCCGGCCTCGCAGAAATGACAGGGGCAATGGTCCCAGCGGTCAGCCGGGGCGTGGAGGAGGCAGTGGTAATGACGACGGAAATCGTAATAGAAGGTATCGACCGTATTAG 1449 0.3761 MSEGAEIDERVDLDEENYMEEMDDDVEEQIDDDGVDGGEDDNAEGSVEEHEYEESAAAEAGRKDQFLDAEKSDLATEEDEQKPSLIDEEEKEKHDELLALPPHGSEVFIGGLPRDTCEDDLRELCEPMGDIVEVRLMKDRDTGESKGYAFVAFKTKEVAQKAIDDLHSKEFKGKTLRCSLSETKHRLFIGNVPKTWSEDEFRKVVEGVGPGVESIELIKDPQNPSRNRGFAFVLYYNNACADYSRQKMSSSSFKLDGNTPTVTWADPKATPDHSAASSQVKALYVKNIPENVTTDQLKDLFRRHGEVTKVVMPPGKVGGKRDFGFIHYAERSSALKAVKETEKYEIDGQALEVVLAKPQAEKKPDGGYAYNPGLHPNHLSHPGYGNFSGNLYGSVGAGYGVAAGYQQPMIYGRGPMPAGMQMMVPMVLPDGRIGYVLQQPGVQVPATRPRRNDRGNGPSGQPGRGGGSGNDDGNRNRRYRPY 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g03170 482 SMART rrm1_1 282 354 IPR000504 GO:0003723
Car03g03170 482 SMART rrm1_1 186 263 IPR000504 GO:0003723
Car03g03170 482 SMART rrm1_1 106 179 IPR000504 GO:0003723
Car03g03170 482 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 107 177 IPR000504 GO:0003723
Car03g03170 482 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 187 253 IPR000504 GO:0003723
Car03g03170 482 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 283 351 IPR000504 GO:0003723
Car03g03170 482 PANTHER GEO13361P1-RELATED 2 480 - -
Car03g03170 482 SUPERFAMILY RNA-binding domain, RBD 185 361 IPR035979 GO:0003676
Car03g03170 482 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 185 267 IPR000504 GO:0003723
Car03g03170 482 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 281 358 IPR000504 GO:0003723
Car03g03170 482 CDD RRM3_hnRNPR_like 280 358 - -
Car03g03170 482 MobiDBLite consensus disorder prediction 49 93 - -
Car03g03170 482 SUPERFAMILY RNA-binding domain, RBD 100 184 IPR035979 GO:0003676
Car03g03170 482 Gene3D - 268 393 IPR012677 -
Car03g03170 482 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN Q 2 480 - -
Car03g03170 482 MobiDBLite consensus disorder prediction 441 482 - -
Car03g03170 482 Gene3D - 11 185 IPR012677 -
Car03g03170 482 MobiDBLite consensus disorder prediction 8 48 - -
Car03g03170 482 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 105 183 IPR000504 GO:0003723
Car03g03170 482 CDD RRM_SF 107 179 - -
Car03g03170 482 Gene3D - 186 266 IPR012677 -
Car03g03170 482 MobiDBLite consensus disorder prediction 1 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g03170 Car-Chr3 76420804 76425210 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g03170 107 435 Eukaryotic Initiation Factors Gene Family AT1G71770 26.357 2.04e-18 86.7