Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g03153 ATGTCTCTCGAATCATTCACTTCTGGTCCTACATTGGAAGTTATTTCCCAAACTATAGATATTGTTTCCGAGTTTGTACTTTCTGCCGGCAATGTTCTTGTGAAGAAGGATAGTTTTAAGGAACTTGCAGCTTACTTGCAAAGGATTGCACCAATCTTAAAACAACTGACGAAAGAAAAGATCAGTGATTCCGATACATTCAAACATGCCATCAAGATTTTGAATCGTAAAGTCAAAGATGCAAAGCAACTGGCTCAAGAATGTAGCAAAACGAGCAAGGTATATCTCCTAGTGAACTGCAGAACCATTATTAAGCGCTTAAAACACAACACAAGTGAGATCAGCAGGGCACTTGGACTTATTCCTTTGGCTACACCAGGCCTTTCTGCCGGAATAATTGATGAAATTGGAAAGTTATGTGACAATATGCAGGCAGCTGAGTTTAAAGCAGCCATATCCGAAGAAGAGATATTAGAGAAAATTGAGTCGGCAATACAAGAAAAGAATGTTGACCGCTCCTATGCAAATAATTTGGTGCTTCTCATCGCAGAGGCTCTCGGGATTACAAACGATCGGTCGGCATTAAAAAAAGAACTTGAAGAGTTTAAAAATGAAATTGAAAATGCCCAACTAAGGAAAGACCGTGCTGAAGCCATACAAATGGATCAAATCATTGCTTTGTTGGAAAGGTCTGATACTGCCTCATCAACTAAGGAAAAGGAACTCAAGTACTTCGCCAAACGTAATTCGTTGGGTACTCAACCGTTGGAGCCTTTACAGTCCTTTTATTGCCCTATTACCGGGGATGTTATGGTTGATCCTGTGGAAACTACATCAGGGCAAACATTTGAGAGAAGTGCAATTGAAAAGTGGTTTGCAGAAGGACATAAACAGTGTCCTTTGACTTTCATTACTTTGGACACGTCGATTTTGAGACCTAACAAAACCTTGAAACAATCAATAGAAGAATGGAAAGATAGAAATACAATGATCAGAATTGCTTCAATGAGAGAGAAAATCCAATCTGGAGACAAAGTTGAAGTATTACGTTGTTTGCAAACTCTTCAAGATTTGTGTGAACAAAAGGACCAGCACAAAGAATGGGTGATATTGGAGAATTACATACCAGTTCTTATCCAAATTCTTTCTGAAAAAAACCGTGATATAAAGAATCATGTCCTTGTCATCCTTTGCATGCTTGTGAAGGACAGCGAAGATGCCAAGGAAAGAATTGCAAATGTTTATAATGCAATCGAGTCTATTGTCCATTCTCTTGGACGTCGTTTGGGGGAAAGGAAGTTGGCAGTGGCGTTACTGCTGGAACTATCCAAATACGATGTGTTAAGAGAAAACATTGGAAAAGTTCAAGGTTGCATACTACTATTGGTGACTATGTCTAGCAGTGAGGACAATCAAGCTGCAAAAGATGCAACAGAGTTATTGGAGAAGCTTGCATGCTCTGATCAAAATGTTATACAGATGGCAAAGGCAAATTATTTCAAGCATCTACTGCAGCGTCTCTCCACAGGACCCGATGATGTGAAGATGATTATGGTAAAAATGTTAGCAGAAATGGAGTCAACCGATCACAATAAGGAGATCTTGTTAGATAATGGTATTCTGTCTCCTCTGCTTCACTTAGTCTCACATAATGATGTTCAGATGAAACTGGTTGCCCTTAAAGCTATCCATAATCTATCTAGTTTAAAGAAAAATGGACTCAAAATGATTCAACAAGGTGTAGCACGCCCATTATTTGGCATTCTTTTCCAGCACAACCTTTCTTCCTCAAGTTTGTGCGAACATGTAGCTCCAATAGTTATGCAACTTGCTGTATCTACCATCTCTCAAGATTCACAGACACCAGTTTTATTGTTAGAATCCGATGAAGATATTTGTAACCTTTTCTCTCTAATTAGCTACACTGTGCCTGATGTGCGACAACTCATTATCCAGACCTTTTATGCCTTGTGTCAGTCGCCCTCAGCTTCATATATCAGGACCAAGCTAAGAGAGTGCCCATCAGTTCTAGTATTGGTCAAGTTGTTTGAGAATGAAAACCTAAATCTTCGAGCGAGTGCTGTGAAGCTGTTTTCTTGCTTGGTAGAAAGCTGTGAGGAAGCCACCATACTGGAGCATGTGAATCAGAAGTGTATTGAGACTTTACTTCTGATCCTGAAATCTTCATCTGATGAAGAGGAAATTGTTTCTGCTATGGGAATAATATACTATCTGCCAAAAATTCAACAGATCACTCAGTGGCTTTTCGATGCTGGGGCGCTTCTGACCATTTGTAATTATATCCAAAAAGGGAAAGACAAAGATATCCAAAAGAGTAAGCTGGTAGAGAATTCTGTTGGTGCCTTGTGTCGTTTTACCATTCCAACAAACTTGGAATGGCAAAAGTGTGCAGCTGAAACCGGGATTATAACTGTTTTAGTACAGTTGCTTGAAAGTGGAACTCCTTCAACAAAACAGCTAGCAGCACTGTCCCTAACTCAATTTTCTAAAAGGTCACATGAACTGAGCAGTCCAATGCCGAAGCGCAGCGGATTTTGGTGCTTCTCAGCTCAAGCAGAAGCTGGATGCTTAGTTCATGGCGGTGTATGTACTGTGGAATCATCATTTTGTCTTTTGGAGGCTGATGCAGTGGGACCACTAGCAAAGACTCTTGGGGAATCTGATCCTGGAGTGAGTGAGACTTCTTTGGATGCTCTTCTAACTTTAATTGAAGGGGAAAAGCTACAGACTGGTAGTAAAGTGCTCGCCGATCAAAATGTCATACCACTAATAATAAGATTTATCGGTTCCCCTTCCCCTGGATTGCAGGAAAAGTCTCTTCATGCTTTGGAAAGGATTTTCCAGCTATACGAGTTCCAACAGAAATATGGAGTTTCAGCTCAAATGCCTCTCGTTGACTTAACTCAACGGGGTAGTGGTAGCATGAAATCCTTGGCAGCTCGAATATTGGCACATTTGAATGTGCTTCATGATCAATCTTCATATTTCTAA 3012 0.4017 MSLESFTSGPTLEVISQTIDIVSEFVLSAGNVLVKKDSFKELAAYLQRIAPILKQLTKEKISDSDTFKHAIKILNRKVKDAKQLAQECSKTSKVYLLVNCRTIIKRLKHNTSEISRALGLIPLATPGLSAGIIDEIGKLCDNMQAAEFKAAISEEEILEKIESAIQEKNVDRSYANNLVLLIAEALGITNDRSALKKELEEFKNEIENAQLRKDRAEAIQMDQIIALLERSDTASSTKEKELKYFAKRNSLGTQPLEPLQSFYCPITGDVMVDPVETTSGQTFERSAIEKWFAEGHKQCPLTFITLDTSILRPNKTLKQSIEEWKDRNTMIRIASMREKIQSGDKVEVLRCLQTLQDLCEQKDQHKEWVILENYIPVLIQILSEKNRDIKNHVLVILCMLVKDSEDAKERIANVYNAIESIVHSLGRRLGERKLAVALLLELSKYDVLRENIGKVQGCILLLVTMSSSEDNQAAKDATELLEKLACSDQNVIQMAKANYFKHLLQRLSTGPDDVKMIMVKMLAEMESTDHNKEILLDNGILSPLLHLVSHNDVQMKLVALKAIHNLSSLKKNGLKMIQQGVARPLFGILFQHNLSSSSLCEHVAPIVMQLAVSTISQDSQTPVLLLESDEDICNLFSLISYTVPDVRQLIIQTFYALCQSPSASYIRTKLRECPSVLVLVKLFENENLNLRASAVKLFSCLVESCEEATILEHVNQKCIETLLLILKSSSDEEEIVSAMGIIYYLPKIQQITQWLFDAGALLTICNYIQKGKDKDIQKSKLVENSVGALCRFTIPTNLEWQKCAAETGIITVLVQLLESGTPSTKQLAALSLTQFSKRSHELSSPMPKRSGFWCFSAQAEAGCLVHGGVCTVESSFCLLEADAVGPLAKTLGESDPGVSETSLDALLTLIEGEKLQTGSKVLADQNVIPLIIRFIGSPSPGLQEKSLHALERIFQLYEFQQKYGVSAQMPLVDLTQRGSGSMKSLAARILAHLNVLHDQSSYF 1003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g03153 1003 Pfam Armadillo/beta-catenin-like repeat 528 568 IPR000225 GO:0005515
Car03g03153 1003 SUPERFAMILY ARM repeat 321 993 IPR016024 -
Car03g03153 1003 Gene3D - 9 125 IPR036537 GO:0007166
Car03g03153 1003 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 13 1003 - -
Car03g03153 1003 SUPERFAMILY RING/U-box 249 331 - -
Car03g03153 1003 Coils Coil 185 219 - -
Car03g03153 1003 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 13 1003 - -
Car03g03153 1003 Coils Coil 71 91 - -
Car03g03153 1003 Pfam U-box domain 262 328 IPR003613 GO:0004842|GO:0016567
Car03g03153 1003 Gene3D - 873 1002 IPR011989 -
Car03g03153 1003 CDD RING-Ubox_PUB 262 302 IPR045210 -
Car03g03153 1003 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 260 329 IPR013083 -
Car03g03153 1003 Gene3D - 330 593 IPR011989 -
Car03g03153 1003 ProSiteProfiles U-box domain profile. 257 331 IPR003613 GO:0004842|GO:0016567
Car03g03153 1003 SMART arm_5 528 568 IPR000225 GO:0005515
Car03g03153 1003 SMART arm_5 871 911 IPR000225 GO:0005515
Car03g03153 1003 SMART arm_5 797 837 IPR000225 GO:0005515
Car03g03153 1003 SMART arm_5 915 955 IPR000225 GO:0005515
Car03g03153 1003 SMART arm_5 362 402 IPR000225 GO:0005515
Car03g03153 1003 SMART Ubox_2 261 324 IPR003613 GO:0004842|GO:0016567
Car03g03153 1003 Gene3D - 610 848 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g03153 Car-Chr3 76323697 76330052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g03153 260 1003 U-box Gene Family AT1G76390 26.236 3.96e-57 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g03153 - - gmx:100799969 1382.08