Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g03144 ATGGACAATCAACCAACTCCGTTCACCGAACATGACGTAACTGCCACTGACAGCCGGAAAACTGGAACGCGCCACCCTGTCTACCGCGGCGTCAGGAAACGACGGTGGGGAAAATGGGTATCAGAAATTCGGGAACCGAAGAAGAAATCCCGTATATGGCTGGGATCATTTTCGGTGCCGGAGATGGCAGCGAGAGCTTACGACGTCGCAGCGTATTGTCTGAAAGGCCGAAAAGCGCAGCTCAATTTTCCCGACGAGGTTGAGCAGTTACCGCTTCCGGCAACATGTACGGCGAGAGACATTCAGGCGGCGGCGTCTAAGGCGGCGAGTATGGTGAAAGCTTCGCCGGGTGAGAAGTCTGACGGAGATAGCGGTGGCGATGACTTTTGGGGTGAGATTGAGTTACCGGAGCTGATGGGCAGCGAGTGTTGCTGGAATTCTCATAGTGAGTCGTCATGGACTTGCTCCGGTGATGTCACGGTATGGCCGGAAGTTGAGCTTTCGGCGCATTAA 513 0.5478 MDNQPTPFTEHDVTATDSRKTGTRHPVYRGVRKRRWGKWVSEIREPKKKSRIWLGSFSVPEMAARAYDVAAYCLKGRKAQLNFPDEVEQLPLPATCTARDIQAAASKAASMVKASPGEKSDGDSGGDDFWGEIELPELMGSECCWNSHSESSWTCSGDVTVWPEVELSAH 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g03144 170 CDD AP2 28 85 IPR001471 GO:0003700|GO:0006355
Car03g03144 170 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF023 5 163 - -
Car03g03144 170 PRINTS Ethylene responsive element binding protein signature 28 39 IPR001471 GO:0003700|GO:0006355
Car03g03144 170 PRINTS Ethylene responsive element binding protein signature 66 86 IPR001471 GO:0003700|GO:0006355
Car03g03144 170 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 5 163 - -
Car03g03144 170 ProSiteProfiles AP2/ERF domain profile. 27 84 IPR001471 GO:0003700|GO:0006355
Car03g03144 170 SUPERFAMILY DNA-binding domain 27 86 IPR016177 GO:0003677
Car03g03144 170 MobiDBLite consensus disorder prediction 1 23 - -
Car03g03144 170 Gene3D AP2/ERF domain 27 85 IPR036955 GO:0003700|GO:0006355
Car03g03144 170 SMART rav1_2 27 90 IPR001471 GO:0003700|GO:0006355
Car03g03144 170 Pfam AP2 domain 26 76 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g03144 Car-Chr3 76280596 76281298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g03144 7 159 AP2-EREBP Transcription Factor Family AT1G01250 58.140 3.50e-56 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Car03g03144 AP2 7.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g03144 K09286 - gmx:100802036 244.202
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g03144 03 76280596 76281298 Car07g02878 07 54721006 54721753 PCT