Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g03143 ATGAAGGTTAAGGAGGTTGCTTCAACACTTCGCTTCCTATTATTGAATGAAGAAGATAAATCCATGGTTGGAGCTGTTCTTGGTTCTCAAGCTTTTGATTTTTTAACAACTAACTGTCTTTCAAACGAACCTGTTTTATTGTCTATTGCTACTTCCGATGATTCTCTTCAAAACAAGCTTTCTGATCTCGTTGAAAATCCCAATTATTCCACCAATTTCAATTGGAACTACGCTATTTTCTGGCAACTTTCTCGTTCAAAATCAGGTGAAATTGTTCTTGGTTGGGGTGATGGGTGTTGCAGAGAACCAAATGAAGAAGAAAAGCGTGGTGGCGTTGGAAATAATTCCAACCTTTCAATGGAGGAAGAAGAAGGGATGAAGCAGAGTTTGAGAAAGAGGGTTTTACAGAAACTGCACACAGTCTTTGGTGGTTCTGATGAAGATGAAGAAAATTACGCTTTTGGCCTTGACCGTGTAACCGACACTGAGATGTTCTTTTTAGCTTCAATGTACTTTTCTTTTCCAAAAGGGTATGGTGGACCCGGTAAGTGTTTTGCTTCTGGAAAATATTTGTGGTTGAAAAAATCTGATATTTCTGATTACTGTGTTCGTTCTTTCTTGGCTAAATCTGCTGGAATTCAAACTGTTGTTTTAGTACCTACTGATTTTGGTGTTGTTGAGTTGGGTTCTGTTAGAATGGTACCTGAAAGTTTTGATCTGTTGAACACTGTCAAATCCTTGTTTCCAATTTCAACTTCCCTTCAATCATCATTGTATCCTTCTAGGGTGATGCATGAAGGAAGAGTTCATGAAAGTGGAGTTTCAAATGGTGTTTTAGTTCCAAAGGTTGTTGTGAATGTCAACAATGGTCGTACACATTTTAGAGAGAAACTTGCTTTTAGGAAAATGGATAATAGCATTAACTTTCCTAGTGGTAGAAATGGTTTTCATGATTCTAGTTGGAGATTGAATCAAGGTCAACCTGAAATTTTTACTCCTAATGGTGTGAGGAAAGATTTTAGGCTCAATCAACCACAAAGGGAGGTGCAAATGCAGATTGACTTTTCAGGAGCGAATTCAAGGCCTTCTGTGAGACCGGTTAATGCTGAATTGGAACTCACTGTTGATGTTGAGGCTTCTGTCAAGGAGGACCAAGCTAGTGATGAAAGGAGGCCGAGGAAACGTGGCAGGAAGCCGGCGAATGGAAGAGACGAACCACTCAATCATGTTGAGGCAGAGAGGCAAAGGCGCGAGAAGCTTAATCAGCGTTTTTATGCATTGAGAGCTGTTGTGCCGAATATCTCAAAGATGGACAAGGCATCCTTACTTGGTGATGCCATTGCTTACATCAATGAGCTTCAAGCGAAACTCGGGATCATGGAGTCCGAGAGAGTAACAAATGGAATTAGTCCTTTGAAGGACGGATCCATTTTGGAGGCGAACTCGAGATCAGAAAATCGTCACCAGCAGGATGTGGTTATTCAAGCTTTGCAGGATGAGGTAATTGTAAAAGTGAGTTGTCCTCTTGATATTCACCCCGTTTCGAAAGTAATTGAAACATTCAAAGAGGCACAAATCAGTGTTGTAGAGTCGAAACTCGCGGCTGCAAATGATACCATCCACCATACTTTTGTAATTAAGTCACAAGGATCTGAACAGCTTACCAAGGACAAGTTGATTGCAGCGTTTTCCAAAGAATCCAACGCCTCTCAAATACAAACATTGTCATCGGTCGGGTAG 1740 0.4063 MKVKEVASTLRFLLLNEEDKSMVGAVLGSQAFDFLTTNCLSNEPVLLSIATSDDSLQNKLSDLVENPNYSTNFNWNYAIFWQLSRSKSGEIVLGWGDGCCREPNEEEKRGGVGNNSNLSMEEEEGMKQSLRKRVLQKLHTVFGGSDEDEENYAFGLDRVTDTEMFFLASMYFSFPKGYGGPGKCFASGKYLWLKKSDISDYCVRSFLAKSAGIQTVVLVPTDFGVVELGSVRMVPESFDLLNTVKSLFPISTSLQSSLYPSRVMHEGRVHESGVSNGVLVPKVVVNVNNGRTHFREKLAFRKMDNSINFPSGRNGFHDSSWRLNQGQPEIFTPNGVRKDFRLNQPQREVQMQIDFSGANSRPSVRPVNAELELTVDVEASVKEDQASDERRPRKRGRKPANGRDEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQAKLGIMESERVTNGISPLKDGSILEANSRSENRHQQDVVIQALQDEVIVKVSCPLDIHPVSKVIETFKEAQISVVESKLAAANDTIHHTFVIKSQGSEQLTKDKLIAAFSKESNASQIQTLSSVG 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g03143 579 SMART finulus 410 459 IPR011598 GO:0046983
Car03g03143 579 MobiDBLite consensus disorder prediction 378 415 - -
Car03g03143 579 Gene3D - 385 455 IPR036638 GO:0046983
Car03g03143 579 Pfam Helix-loop-helix DNA-binding domain 408 454 IPR011598 GO:0046983
Car03g03143 579 CDD bHLH_AtAIB_like 401 464 - -
Car03g03143 579 MobiDBLite consensus disorder prediction 104 123 - -
Car03g03143 579 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 404 453 IPR011598 GO:0046983
Car03g03143 579 PANTHER MYC 14 568 IPR045084 GO:0003700|GO:0006355
Car03g03143 579 PANTHER ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR 14 568 - -
Car03g03143 579 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 56 248 IPR025610 -
Car03g03143 579 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 403 464 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g03143 Car-Chr3 76263318 76265474 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g03143 13 579 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 49.271 1.04e-173 503
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car03g03143 bHLH-MYC_N 1.8e-54 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g03143 - - cam:101513355 1127.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g03143 03 76263318 76265474 Car07g02877 07 54673957 54676922 PCT