Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g03137 ATGGAAACAGGTGGTGTTGATAGCAGTATGTTGTCATTGAATATGATGGAAGAGGATGAGCATCCTCATCAATTTTCTTCAATCTCAAAGCTACACAACAATTCTCAAACCACTACTAGTGTCCATGATCTTCTTGAATGCCCTGTTTGCACCAATTCAATGTACCCTCCAATCCATCAGTGCCACAATGGGCACACCCTTTGTTCAACATGTAAGACAAGGGTACACAACAGATGCCCAACTTGCAGACAAGAGCTTGGTGATATAAGGTGTTTAGCATTGGAGAAGATAGCAGAATCACTTGAATTTCCTTGTAGATACATCTCTCTTGGTTGTTCAGAGATATTTCCATATTATACCAAACTCAAACATGAGACTATTTGTACCTTTAGACCATACACATGCCCTTATGCTGGATCAGATTGTTCTTTTCTTGGAAATATTCCATATCTTGTTGCCCATTTAAGAGATGACCATGGTGTTGATATGCATTCTGGATCCACTTTTAACCATCGTTATGTCAAATCAAATCCTATGGAAGTTGAAAATGCTACATGGATGCTAACGGTTTTCCACTGTTTTGGTAAATATTTTTGTCTTCATTTTGAAGCATTTCAACTTGAAATGGCACCTGTTTACATGGCTTTTCTTAGATTCTTGGGTGATGATAGAGAGGCTAAGAACTACAGTTACAGCCTAGAAGTGGGAGGAAATGGACGTAAACTAACATTTGAAGGGAGTCCAAGAAGCATTAGAGAAAGCCATAAGAAAGTGAAGGATAGTCATGATGGCCTTATCATATACCGTAACATGGCACTTTTCTTCTCGGGTGGGGATACTAAAAAGTTGAAGCTGAGAGTAACAGGAAAGATATGGAAAGAACAACAAAACTCTCAAGGCCCATTAATGACCAAAACTCAGCAGCTTGTAGTAGAGAGAGCGGCGTTAACGTCGGCCGGCACACACAGTGACAGGAAAAAAATGAAGGTTGTTTCAGTAGCACTTAGGTCATTCAAATGCAATTTGTCAAATAGGTTTCAACAGACTCATTTGCTTAGAAATCTCTCTACTTGGACATTTCCAGATAACAGAACTGCTAATGAGAAGGGTGACAAGTCAGAGTCCTTTGAGGAATTTGAGAAGCGGATATTTAGTCCTGGGGGGACTTCCAAAACTGATGCCATTCTAGATAAGCTGAATCAACGGGTAAACAATCGAGATAGATATAGTTCAGTGCAGGGTGGAAGTTCCCAGTTTTTGGATGATCTAGAACAAACTTTTGACACATTATCTGATGGAATGGATGGAAAACTGAATAATGCTGCTAGATACTTTGAATTTGATCCTGATGAAATCGATAAAGAGGATTATTCTTTTCGATATGATACCACTTTTCATCGTGGATCAACATATACTCTAAAGGATCTTGATCTTACAAAGCCTGCTGCACGCAAACCCCCGATAAGGAGTGAACTCTCAGTAACCACTAAAGAAGTTCTTAGTCAAGCTGATTTCAGGAATGTAAGATTCCTAGCAAACTTCATAACAGAAGCTGGAATTCTTATCAAGAGAAGCCAGACTGGCATTAGTGCAAAGGCTCAAAGGAAGGTTGCCAGGGAGATTAAAACTGCACGAGCTTTCGGCTTGATGCCCTTTACAACAATGGGTACGAAGTCATTTATTTATGGGAGAACTATGGAGAATCTCGATGACGACTTCTCTTACAGGAGTGAAATTAGAAACACGCCTAGTGAACTTGATGTGGACGGAGACATCCCTTAA 1782 0.3984 METGGVDSSMLSLNMMEEDEHPHQFSSISKLHNNSQTTTSVHDLLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKIAESLEFPCRYISLGCSEIFPYYTKLKHETICTFRPYTCPYAGSDCSFLGNIPYLVAHLRDDHGVDMHSGSTFNHRYVKSNPMEVENATWMLTVFHCFGKYFCLHFEAFQLEMAPVYMAFLRFLGDDREAKNYSYSLEVGGNGRKLTFEGSPRSIRESHKKVKDSHDGLIIYRNMALFFSGGDTKKLKLRVTGKIWKEQQNSQGPLMTKTQQLVVERAALTSAGTHSDRKKMKVVSVALRSFKCNLSNRFQQTHLLRNLSTWTFPDNRTANEKGDKSESFEEFEKRIFSPGGTSKTDAILDKLNQRVNNRDRYSSVQGGSSQFLDDLEQTFDTLSDGMDGKLNNAARYFEFDPDEIDKEDYSFRYDTTFHRGSTYTLKDLDLTKPAARKPPIRSELSVTTKEVLSQADFRNVRFLANFITEAGILIKRSQTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFIYGRTMENLDDDFSYRSEIRNTPSELDVDGDIP 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g03137 593 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 155 IPR013083 -
Car03g03137 593 ProSiteProfiles Zinc finger SIAH-type profile. 100 160 IPR013010 GO:0008270
Car03g03137 593 TIGRFAM S18: ribosomal protein bS18 496 553 IPR001648 GO:0003735|GO:0005840|GO:0006412
Car03g03137 593 Gene3D Ribosomal protein S18 491 555 IPR036870 -
Car03g03137 593 CDD RING-HC_SIAHs 45 83 - -
Car03g03137 593 SUPERFAMILY TRAF domain-like 100 289 - -
Car03g03137 593 PANTHER UBIQUITIN LIGASE SINAT3 1 301 - -
Car03g03137 593 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 25 99 IPR013083 -
Car03g03137 593 Pfam Seven in absentia protein family 89 288 IPR018121 GO:0005737|GO:0006511|GO:0007275
Car03g03137 593 Pfam Ribosomal protein S18 503 550 IPR001648 GO:0003735|GO:0005840|GO:0006412
Car03g03137 593 ProSiteProfiles Zinc finger RING-type profile. 47 83 IPR001841 -
Car03g03137 593 SUPERFAMILY Ribosomal protein S18 483 553 IPR036870 -
Car03g03137 593 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 301 - -
Car03g03137 593 PRINTS Ribosomal protein S18 family signature 542 552 IPR001648 GO:0003735|GO:0005840|GO:0006412
Car03g03137 593 PRINTS Ribosomal protein S18 family signature 510 520 IPR001648 GO:0003735|GO:0005840|GO:0006412
Car03g03137 593 PRINTS Ribosomal protein S18 family signature 528 542 IPR001648 GO:0003735|GO:0005840|GO:0006412
Car03g03137 593 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 164 288 IPR008974 GO:0005515
Car03g03137 593 SUPERFAMILY RING/U-box 31 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g03137 Car-Chr3 76204830 76210946 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g03137 27 295 C3H Transcription Factor Family AT2G41980 73.606 2.33e-151 436
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g03137 K04506 - gmx:100792687 571.622