Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g03132 ATGATAATTAAGCATTCTTTGAAAGCTGAATTGCAAAACCTAAAGCGGTGTAAGCATGAAGAAGAAGAAAAGGACCGTCTTAATTCGGCGATTCAGAAGAAACAGAAGGTGAACGGCGTTGACTCCATTGCTAACAGTGAAGACTTGAACATCTTTTTTGTCTCTGGATCCGGCGAAGGATTAAATTGCGGCGGTGGTGGTGAAGTCCACTCCAATTCAACTTCCGTGGAATTGAACGGTGGAAGTGCAAAAGCACCTCCGTTGTTACGATCTTCCAGAGGCCGCGTTCAAATGCTTCCATCTAAGTTCAATGATTCGGTACTTCTCGATACATGGAAGAATACTAATAGGCGAATTAAAATATCTGAATTAGGGTTTGAAGGTGATAATGGTTCAAGAGACACTGAAATGAGAATTTTGAATAAGGGAAAGGAAAACAAATGCGACTCAAAACAAGAGATTGATTATGGTTTTGATGAATTTAACTACGAGAAGCATGCTGAGTCGTTTAAGAGCATTAAAACGACGGTTAAAGGGAGTCGTTTGTTGTTGGTTAAGAAAGAGAGTGAAAATGGTTTGGTTGAAAAGGCTAAAAAGGGGAAGAAGATTTTCAAACTAGAGGATTTTCATTTGGGTGATATAGTTTGGGCAAAATGTGGCAAGAGTTATCCGGCGTGGCCTGCTGTGGTGATTGATCCCATTTTGCATGCTCCTCAGTCTGTTCTCAGCTGTTGTGTTCCGGGTGCAATTTGTGTTATGTTTTTTGGTTATTCAAAAAATGGAAAGCAAAGGGACTATGCATGGGCGAAGCAGGGGATGGTATTCCCCTTCTTGGAATTCATGGATAGATTCCAGGGGCAGATCCGATTGTACAAGAGCAAACAGAGTGATTTTCACAAGGCAATGGAGGAGGCAATGTTGGCGGAAGATGGCATTCTGGACCCACACTTCAGAACTGAGCAAATTGTGGAGGGTGCGGGTTCCTGTGCTGATCAGGAGCATTGCTACAAAGACCAGGATGCAAAATCTTGTTTTGGCTGTGGTTTGACGTTGCCATGCAAAACCATGAAGAAGACTAAAGATTCAAGCTGTGCTACTCAGCATTATTGTAAACCTTGTGCAAAGTTACTAAAATCAAAACAATATTGTGGCATTTGCAAAAAGATTTGGCACCATTCAGATGGTGGTGATTGGGTATGCTGCGATGGTTGTAATGTTTGGGTGCATGCTGAGTGTGACAAAATTTCCAGCAAACTTTTCAAGGATCTGGAAAATATAGATTACTATTGCCCAGATTGCAAGGGAAAGTTGGATTGTAAATTATCAGCATCACAAACATACAAATCAAAAAATAAGTCAGTAGAGAACAACCGAAAACCTGCGGTACCTGAAGAGCTAGTGGTGGTGTGCAATGACATGAAAGGAATTTACTTTCCAAAGCTTCATTTAGTTATGTGCAAGTGTGGCATGTGTGGGTCAAGGAAGCAGGCATTGGCTGAATGGGAACGGCATGCAGGTTGCAGAGCCAAAAAATGGAAACATAGTGTGAAACTAGAAAGTACAATGCAACCATTAATGAAATGGATCACAGAACACAATTCCCAAGCTGGAATTTCCATGCAGTTAGATCAGAAACGGGTGCTTTCCTTTTTGCAAGagaagtatgagccagtttatgcaacatggacaacagaaagatgtgcgatttgcagatgggttgaagattgggaagataacaaaattattatctgtaacagGTGCCAAGTTGCAGTTCACCAAGAGTGCTATGGGGCAATGAATGTTAAAGATTTTACTTCTTGGGTTTGTAGAGTGTGTGAAACTCCTGAGGTAGAAAGAGAGTGTTGCCTCTGTCCAGTAAAAGGTGGAGCACTGAAGCCAACTGATGTTGAGTTGTTGTGGGTTCATGTAACATGCGCTTGGTTTCGTCCTGAAGTTGTTTTCAGAAACCACGAGGCAATGGAACCTGCCTCTGGAATCCTTAAGATTCCTCCTAATTTGTTTTTGAAGACTTGCGTGATCTGTAAACAAAGCCATGGTTCCTGTACAAGTTGTTGCAAGTGTGCTACTTATTTTCATGTGATGTGTGCGTCAAGAATGGGATACAGCATGGAATTGCGTTCTACAGTGAAGAAGGGGACTCAAATAACAAAGACACTAATATATTGTGCAGTTCACAGGGTCCCAAATCCAGATTCAGTAGTGGTTGTGCATACACCCCTTGGGGTATTTTCTCCTAGAACTTCGCTTCAAAATCACAAGGGATGCTTAAGAGGATCAAAGCTTATTTCATCAGATAATACAGAACTCCTTGAACCTTCAACCTCTGAAGGTTATGAGGTTGAGCCACTATCTGCTGCCAGGTGTCGTGTTTACAGAAGGTCTCCCAATAAGAAGGATGATACACCAATAATTCACTTGCTTGGGGGGCCAAACCTTCATTCTTTAAGTGAAATAACTCAACTGAACAGCAATAAGGATGCTGGGGTATTTTCTTCATTTAAGGAACGCCTTCACCATTTACAGAAAACAGAAAATTGTAGAGTTTGCCTTGGAAAATCGGCTATTCAAGGGTGGGGCCTCTTTGCTCGTAGAGATTTGCAAGAAGGAGAAATGGTCATTGAGTATCGTGGTGAGCAGGTAAGGCGTAGTGTTGCTGATCTGAGGGAAGCAAAGTACCGTTCAGAAGGCAAGGCTTGTTATCTGTTCAAGATTAGCGAGGAGGTGGTTATTGATGCAACAGATAAAGGCAACATTGCACGTCTAATAAATCATTCTTGCATGCCAAACTGCTTTGCAAGGATTATGTGTTTGGGTGATCAGGAGAGCCAGATTGTTCTTATTGCAAAGACCAATATTTCTGCCGGTGAAGAACTAACGTATGATTACTTGTTCGATCCAGATGAGCGGGATGAACTCAAGGTTCCCTGCCACTGCAGAGCCCCCAATTGTAGGAAATTTATGAACTAG 2988 0.4066 MIIKHSLKAELQNLKRCKHEEEEKDRLNSAIQKKQKVNGVDSIANSEDLNIFFVSGSGEGLNCGGGGEVHSNSTSVELNGGSAKAPPLLRSSRGRVQMLPSKFNDSVLLDTWKNTNRRIKISELGFEGDNGSRDTEMRILNKGKENKCDSKQEIDYGFDEFNYEKHAESFKSIKTTVKGSRLLLVKKESENGLVEKAKKGKKIFKLEDFHLGDIVWAKCGKSYPAWPAVVIDPILHAPQSVLSCCVPGAICVMFFGYSKNGKQRDYAWAKQGMVFPFLEFMDRFQGQIRLYKSKQSDFHKAMEEAMLAEDGILDPHFRTEQIVEGAGSCADQEHCYKDQDAKSCFGCGLTLPCKTMKKTKDSSCATQHYCKPCAKLLKSKQYCGICKKIWHHSDGGDWVCCDGCNVWVHAECDKISSKLFKDLENIDYYCPDCKGKLDCKLSASQTYKSKNKSVENNRKPAVPEELVVVCNDMKGIYFPKLHLVMCKCGMCGSRKQALAEWERHAGCRAKKWKHSVKLESTMQPLMKWITEHNSQAGISMQLDQKRVLSFLQEKYEPVYATWTTERCAICRWVEDWEDNKIIICNRCQVAVHQECYGAMNVKDFTSWVCRVCETPEVERECCLCPVKGGALKPTDVELLWVHVTCAWFRPEVVFRNHEAMEPASGILKIPPNLFLKTCVICKQSHGSCTSCCKCATYFHVMCASRMGYSMELRSTVKKGTQITKTLIYCAVHRVPNPDSVVVVHTPLGVFSPRTSLQNHKGCLRGSKLISSDNTELLEPSTSEGYEVEPLSAARCRVYRRSPNKKDDTPIIHLLGGPNLHSLSEITQLNSNKDAGVFSSFKERLHHLQKTENCRVCLGKSAIQGWGLFARRDLQEGEMVIEYRGEQVRRSVADLREAKYRSEGKACYLFKISEEVVIDATDKGNIARLINHSCMPNCFARIMCLGDQESQIVLIAKTNISAGEELTYDYLFDPDERDELKVPCHCRAPNCRKFMN 995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g03132 995 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 374 438 IPR013083 -
Car03g03132 995 SUPERFAMILY FYVE/PHD zinc finger 564 629 IPR011011 -
Car03g03132 995 Gene3D - 205 310 - -
Car03g03132 995 CDD SET_SETD1-like 842 991 - -
Car03g03132 995 SUPERFAMILY Tudor/PWWP/MBT 208 310 - -
Car03g03132 995 SUPERFAMILY SET domain 847 992 IPR046341 -
Car03g03132 995 ProSitePatterns Zinc finger PHD-type signature. 567 612 IPR019786 -
Car03g03132 995 SMART set_7 853 976 IPR001214 GO:0005515
Car03g03132 995 CDD PHD_ATX3_4_5_like 566 612 IPR042011 -
Car03g03132 995 SMART PostSET_3 979 995 IPR003616 -
Car03g03132 995 Coils Coil 4 37 - -
Car03g03132 995 Gene3D SET domain 818 995 IPR046341 -
Car03g03132 995 Pfam PWWP domain 212 308 IPR000313 -
Car03g03132 995 Pfam PHD-finger 382 435 IPR019787 -
Car03g03132 995 CDD PHD_TCF19_like 383 433 - -
Car03g03132 995 SUPERFAMILY FYVE/PHD zinc finger 380 440 IPR011011 -
Car03g03132 995 SMART PWWP_4 209 278 IPR000313 -
Car03g03132 995 ProSiteProfiles Zinc finger PHD-type profile. 564 615 IPR019787 -
Car03g03132 995 SMART PHD_3 382 434 IPR001965 -
Car03g03132 995 SMART PHD_3 677 733 IPR001965 -
Car03g03132 995 SMART PHD_3 566 613 IPR001965 -
Car03g03132 995 ProSiteProfiles SET domain profile. 853 970 IPR001214 GO:0005515
Car03g03132 995 ProSiteProfiles Zinc finger PHD-type profile. 380 436 IPR019787 -
Car03g03132 995 Pfam SET domain 864 969 IPR001214 GO:0005515
Car03g03132 995 Pfam PHD-zinc-finger like domain 620 732 - -
Car03g03132 995 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 552 618 IPR013083 -
Car03g03132 995 ProSiteProfiles PWWP domain profile. 211 280 IPR000313 -
Car03g03132 995 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 619 734 IPR013083 -
Car03g03132 995 ProSiteProfiles Post-SET domain profile. 979 995 IPR003616 -
Car03g03132 995 PANTHER PHD FINGER PROTEINS 1 995 - -
Car03g03132 995 Pfam PHD-finger 579 613 - -
Car03g03132 995 ProSiteProfiles Extended PHD (ePHD) domain profile. 618 733 IPR034732 -
Car03g03132 995 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 995 IPR025780 -
Car03g03132 995 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 1 995 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g03132 Car-Chr3 76180142 76189592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g03132 567 719 C2H2 Transcription Factor Family AT3G14740 35.185 1.06e-19 90.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Car03g03132 zf-HC5HC2H_2 6.4e-27 CL0390