Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g03131 ATGAACATCTCGAAGTTCTTTCACTTCTTCATATTTTTTCTTGTCATATATGCCTCAGAAGACTATTGTCGACATTCTTGGTGCAGTAACGATAACATCCTTATTCGTTTCCCTTTTCAAGTTGAAGTAGAAGGTGATCAATATCCTTATTGTGGCTATCCTGGTTTCAAATTAACTTGTACAAATGATAGCAAAACAGTTTTAACACTCCCTTATACAGGAGCCTTCTATGTTCGCAAAATCAACTATCACAAACAGTACATACAGCTTTATGACCCTCATGATTGCCTTCCAAATCGTCTTCTAAGCCTTAATCTTTCAAGTTCACCTTTTACTGCCAAATTTATTACTAACTACACCCTCCTAATATGCTCAACTCGGAACATAAGATCACAATTCATACCTCTTGAATGTCTTAGCAATTCTACACATTTTGTATCAGCTATTCCTTCGATGAACTTCACCAATTCATTGCCTCAGTCTTGCTATGTTAATAGAAAGATTTCAATTCCAGTTGCAAGATCATATGATGAGATTTTCAGAAACTACCTCAGCGAAGATCTTCTACTAACATGGTCTTCGCCTGATTGTAGACATTGTGAATTACAAGATGGCATGTGCAAATTTGAGAGCAGAAATAGTGATCGAGTTCGATGTTTCTCCGATCACCAAACGGGTGACTCAAAACATGCCATTGTGATATTTAGAATCATCATATTATCCATTGGGGGAGCAGCTATGATGTGTGCAATTGGGATGGGGTGCTTAACGCACTTCAAGCGCAGAAGGACAATATCAGCTGAACCTACTATTGATATTACCATTACCAGGATGAGGATGGGTCTGGATGAGACAACAATTGAGTCTTTCGACAAGATTGTATTAGGGGAGAGTCGAAGACTGCCTGGAGTGGGACATAATGATGGAACAGGATGTTCAATATGCCTCTCAGAGTACAACAGCAAGGACATAATCAGATGCATTCCTAAATGCACACACTGTTTCCATGTTCACTGCATTGATGAATGGCTTCGCATGAACTCTACGTGTCCGCTTTGCCGCAattctccttcaccttctcattctgttcttcattcAATATCATGA 1107 0.3794 MNISKFFHFFIFFLVIYASEDYCRHSWCSNDNILIRFPFQVEVEGDQYPYCGYPGFKLTCTNDSKTVLTLPYTGAFYVRKINYHKQYIQLYDPHDCLPNRLLSLNLSSSPFTAKFITNYTLLICSTRNIRSQFIPLECLSNSTHFVSAIPSMNFTNSLPQSCYVNRKISIPVARSYDEIFRNYLSEDLLLTWSSPDCRHCELQDGMCKFESRNSDRVRCFSDHQTGDSKHAIVIFRIIILSIGGAAMMCAIGMGCLTHFKRRRTISAEPTIDITITRMRMGLDETTIESFDKIVLGESRRLPGVGHNDGTGCSICLSEYNSKDIIRCIPKCTHCFHVHCIDEWLRMNSTCPLCRNSPSPSHSVLHSIS 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g03131 368 Pfam Ring finger domain 312 354 IPR001841 -
Car03g03131 368 CDD RING-H2_EL5_like 312 354 - -
Car03g03131 368 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 272 359 IPR013083 -
Car03g03131 368 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 365 - -
Car03g03131 368 ProSiteProfiles Zinc finger RING-type profile. 312 354 IPR001841 -
Car03g03131 368 PANTHER RING-H2 FINGER PROTEIN ATL21A-RELATED 1 365 - -
Car03g03131 368 Pfam Wall-associated receptor kinase galacturonan-binding 23 92 IPR025287 GO:0030247
Car03g03131 368 SMART ring_2 312 353 IPR001841 -
Car03g03131 368 Pfam Wall-associated receptor kinase C-terminal 157 222 IPR032872 -
Car03g03131 368 SUPERFAMILY RING/U-box 307 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g03131 Car-Chr3 76177149 76179642 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g03131 28 359 C3H Transcription Factor Family AT2G25410 38.000 7.23e-76 237
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g03131 - - gmx:100799895 428.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g03131 03 76177149 76179642 Car07g02868 07 54514694 54517549 PCT