Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g03130 ATGGAACATGAGAAGAGCCAAACGATGTACAACCTGTTCGTGAAGCACTTAGACGGTAAAACCCTAACCCTATTATTCCCTTCTCCGATCCTTTACGCCAATTCCATTAAGGATCGTCTCTTCCAACTCACCGGAATCCCAATCCGACACCAACGTCTCGTCACCGGTTGCCGCCACCTCAACGACGATAAATCGGCAATATGTTGTTCGCCGGAAGATGGGAACATGTTCCCCTCGGTACGGCTGCTTCTCCGTCTGAAAGGCGGGAAAGGAGGATTCGGATCGCTGCTTCGTGGAGCGGCAACGAAAGCAGGGCAGAAGAAGACGAACAATTTCGACGCGTGTAGAGATATGAGTGGGCGAAGGTTGAGACACGTTAACGCGGAGAAGAGGTTGGAGGAATGGAGAGCCGGTGAAGAAGAGAGAAAGCTCGAGAAAGTTGCGGAAGAGTTTTTGAAGAAACAGATGAAGAAGAATAAGGGTAAGGGTAAGAATGGTGATGTTGACGGTGAGGCTCATAAGTATGTTGCCAAATATAGGGAACAATCTGAACGATGTGTTGCGGATGTTGCTTTGTCTGTACAAGATTCTCTCAGAGATTCTAAGCGCAAGTCTTCACCGATATCAGAAGCTTCTCTTCCACATGATCGCAAGAAGTTGAAGATATGGATGGGGAAGAGGACATTGAATGAAAGtgatgattccgattctgatgaagatgttgatgatgttgaGGGGGAAACTGATAAATCTGTTTTGTTAAATAGTCAGAATGAGTCTGGGTTAACTAAGGCTGAAGATAGTTCTGATTCTGTGACTGGTTTAAAGCGGGATGGAGACTCTTCTGGGGTCGGCTCGTGTGAGAGTGGATCTGAAGAAGAGAAGGAAGCTGTTGTAGAAGAAGGCAAAGTGGAATCTGCTGGAGGATCCCAGAGTTGTGATACTACTATTCAGGCCAGTATGATGGAGATTAATGCTGTGCCTTGTTCAGAGACGTTGGATTCTGGAATTAGTGCTCAAGATCAGGATAACAAAGTTGATGGCACTGTTGCTCAAGTCTCAAATATTGTGAGCTCTGAAATTGTGGCCAATGACATGGAAATTGATGGTTCTCTTGAGCATAAAACAGTGGTCATTGAAGAAAGCTTGCCAAGCATTAGTGTCCCAGTGAAGGAGGAGCCTTTGAATTTTGATGCTTTTAATTCAGCTGCTGAACTTGAGATTCTTGGCTTGGAAAAGTTGAAGACTGAACTCCAGTTGCATGGGTTAAAATGTGGTGGTACTTTGCAGGAGCGTGCTGCTAGGCTTTTTCTTTTAAAATCGACTCCCCTGGATAAACTTCCAAAGAAACTGCTAGCAAAGAAATAA 1368 0.4393 MEHEKSQTMYNLFVKHLDGKTLTLLFPSPILYANSIKDRLFQLTGIPIRHQRLVTGCRHLNDDKSAICCSPEDGNMFPSVRLLLRLKGGKGGFGSLLRGAATKAGQKKTNNFDACRDMSGRRLRHVNAEKRLEEWRAGEEERKLEKVAEEFLKKQMKKNKGKGKNGDVDGEAHKYVAKYREQSERCVADVALSVQDSLRDSKRKSSPISEASLPHDRKKLKIWMGKRTLNESDDSDSDEDVDDVEGETDKSVLLNSQNESGLTKAEDSSDSVTGLKRDGDSSGVGSCESGSEEEKEAVVEEGKVESAGGSQSCDTTIQASMMEINAVPCSETLDSGISAQDQDNKVDGTVAQVSNIVSSEIVANDMEIDGSLEHKTVVIEESLPSISVPVKEEPLNFDAFNSAAELEILGLEKLKTELQLHGLKCGGTLQERAARLFLLKSTPLDKLPKKLLAKK 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g03130 455 Pfam Replication stress response SDE2 C-terminal 391 454 - -
Car03g03130 455 SUPERFAMILY Ubiquitin-like 6 76 IPR029071 -
Car03g03130 455 Pfam Silencing defective 2 N-terminal ubiquitin domain 11 158 IPR024974 -
Car03g03130 455 Gene3D - 2 91 - -
Car03g03130 455 PANTHER SPLICING FACTOR SF3A-RELATED 9 454 - -
Car03g03130 455 MobiDBLite consensus disorder prediction 250 269 - -
Car03g03130 455 PANTHER REPLICATION STRESS RESPONSE REGULATOR SDE2 9 454 - -
Car03g03130 455 MobiDBLite consensus disorder prediction 229 312 - -
Car03g03130 455 CDD Ubl_ubiquitin_like 12 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g03130 Car-Chr3 76174289 76176589 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g03130 379 454 C2H2 Transcription Factor Family AT5G06160 46.053 1.16e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g03130 K25059 - gmx:100799364 490.345