LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car03g03099	ATGGCGGCGAAGAGAGAAGAAAAAAGCGCGTCGGAATTGAAGGATAAGTTATGGAAACTCGTCAAAACCATCGTTGACACCGATGACTTTACTTTGCAAACCGCCGATGATGCAATCGCCACTCTTTCTTCTCTCAAGGATTTCAAGTTTCGTCGAAACGGACCAAAATCTTTCTCCGATAAATTGGACGATTTTGCCCTTCCTCCTGAATTTCGCTGTCCCATTTCCACTCAGTTGATGACTGACCCCGTTATCTTGTCCACTGGACAGACTTATGATCGGCCATTTATCCAGAGGTGGTTGAATGAAGGCCACAGAACATGTCCTCAAACCCAGCAAGTTTTGTCTCATACAATTCTTACTCCTAATTATTTGAAAGCAGCTGCGAAAGAACTTCGTCTGTTAACGAAGCGAACACCTTCATTTCGAACCCTTTTTCGGGAGTCCGGTGATGTGATTACACAGTTGCTAAGTCCTTTGTCACCGGACACCGGTTGTACTCACCCTGATCTGCAAGAGGATTTGATCACGACTGTTTTGAATCTCTCAATTCACGACGATAATAAGAAAGTGTTTGCAGAGGATCCGGCCCTCATTTCCCTTCTCATTGATGCCTTGAAATGTGGAACCATCCAAACAAGAAGCAATGCTGCAGCAGCTATTTTCACACTATCAGCTCTTGATTCCAATAAGCTCATCATTGGAAAATCAGGAGCTATCAAACATTTGCTTGGCCTATTAGATGAGGGACATCCATTTGCCATGAAAGATGCTGCATCGGCTATATTTAACTTATGTCTTGTCCACGAGAATAAAGGGAGGACCGTGCGAGAAGGGGCGGTTAAGGTCATTTTGAACAAGATAATGGATCACATTCTAGTCGATGAGCTGTTGGCTATACTGGCACTCCTCTCCAGTCATCCCAAGGCTGTTGAAGAAATGGGCGATCGTGGCGCTGTTCCTTTCTTACTGAGTATTATAAGGGAGAGCACATCAGAAAGAAGCAAGGAAAATTGTGTAGCAATCCTATATACAATCTGTTATAGTGATAGAACAACGTGGAAGGAAATCAAAGAAGAAGAAAAGGCCAATGGTACACTATCCAAGCTCGCGCAATGCGGAACTTCAAGGGCGAAAAGGAAGGCTACCAGTATTCTTGAAAGGGTTAACAGATCTCCATCCTTAACTCACACTGCTTAG	1200	0.4392	MAAKREEKSASELKDKLWKLVKTIVDTDDFTLQTADDAIATLSSLKDFKFRRNGPKSFSDKLDDFALPPEFRCPISTQLMTDPVILSTGQTYDRPFIQRWLNEGHRTCPQTQQVLSHTILTPNYLKAAAKELRLLTKRTPSFRTLFRESGDVITQLLSPLSPDTGCTHPDLQEDLITTVLNLSIHDDNKKVFAEDPALISLLIDALKCGTIQTRSNAAAAIFTLSALDSNKLIIGKSGAIKHLLGLLDEGHPFAMKDAASAIFNLCLVHENKGRTVREGAVKVILNKIMDHILVDELLAILALLSSHPKAVEEMGDRGAVPFLLSIIRESTSERSKENCVAILYTICYSDRTTWKEIKEEEKANGTLSKLAQCGTSRAKRKATSILERVNRSPSLTHTA	399

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car03g03099	399	Pfam	U-box domain	68	124	IPR003613	GO:0004842\|GO:0016567
	Car03g03099	399	SMART	arm_5	185	226	IPR000225	GO:0005515
	Car03g03099	399	SMART	arm_5	227	267	IPR000225	GO:0005515
	Car03g03099	399	SMART	arm_5	307	348	IPR000225	GO:0005515
	Car03g03099	399	SUPERFAMILY	RING/U-box	63	125	-	-
	Car03g03099	399	ProSiteProfiles	U-box domain profile.	66	140	IPR003613	GO:0004842\|GO:0016567
	Car03g03099	399	CDD	RING-Ubox_PUB	71	113	IPR045210	-
	Car03g03099	399	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	65	133	IPR013083	-
	Car03g03099	399	PANTHER	U BOX DOMAIN-CONTAINING	7	125	-	-
	Car03g03099	399	PANTHER	U BOX DOMAIN-CONTAINING	126	397	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Car03g03099	Car-Chr3	75948031	75950260	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Car03g03099	126	399	U-box Gene Family	AT3G07360	61.372	5.72e-113	332

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car03g03099	-		-	gmx:100806619	587.8

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