Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car03g03099 | ATGGCGGCGAAGAGAGAAGAAAAAAGCGCGTCGGAATTGAAGGATAAGTTATGGAAACTCGTCAAAACCATCGTTGACACCGATGACTTTACTTTGCAAACCGCCGATGATGCAATCGCCACTCTTTCTTCTCTCAAGGATTTCAAGTTTCGTCGAAACGGACCAAAATCTTTCTCCGATAAATTGGACGATTTTGCCCTTCCTCCTGAATTTCGCTGTCCCATTTCCACTCAGTTGATGACTGACCCCGTTATCTTGTCCACTGGACAGACTTATGATCGGCCATTTATCCAGAGGTGGTTGAATGAAGGCCACAGAACATGTCCTCAAACCCAGCAAGTTTTGTCTCATACAATTCTTACTCCTAATTATTTGAAAGCAGCTGCGAAAGAACTTCGTCTGTTAACGAAGCGAACACCTTCATTTCGAACCCTTTTTCGGGAGTCCGGTGATGTGATTACACAGTTGCTAAGTCCTTTGTCACCGGACACCGGTTGTACTCACCCTGATCTGCAAGAGGATTTGATCACGACTGTTTTGAATCTCTCAATTCACGACGATAATAAGAAAGTGTTTGCAGAGGATCCGGCCCTCATTTCCCTTCTCATTGATGCCTTGAAATGTGGAACCATCCAAACAAGAAGCAATGCTGCAGCAGCTATTTTCACACTATCAGCTCTTGATTCCAATAAGCTCATCATTGGAAAATCAGGAGCTATCAAACATTTGCTTGGCCTATTAGATGAGGGACATCCATTTGCCATGAAAGATGCTGCATCGGCTATATTTAACTTATGTCTTGTCCACGAGAATAAAGGGAGGACCGTGCGAGAAGGGGCGGTTAAGGTCATTTTGAACAAGATAATGGATCACATTCTAGTCGATGAGCTGTTGGCTATACTGGCACTCCTCTCCAGTCATCCCAAGGCTGTTGAAGAAATGGGCGATCGTGGCGCTGTTCCTTTCTTACTGAGTATTATAAGGGAGAGCACATCAGAAAGAAGCAAGGAAAATTGTGTAGCAATCCTATATACAATCTGTTATAGTGATAGAACAACGTGGAAGGAAATCAAAGAAGAAGAAAAGGCCAATGGTACACTATCCAAGCTCGCGCAATGCGGAACTTCAAGGGCGAAAAGGAAGGCTACCAGTATTCTTGAAAGGGTTAACAGATCTCCATCCTTAACTCACACTGCTTAG | 1200 | 0.4392 | MAAKREEKSASELKDKLWKLVKTIVDTDDFTLQTADDAIATLSSLKDFKFRRNGPKSFSDKLDDFALPPEFRCPISTQLMTDPVILSTGQTYDRPFIQRWLNEGHRTCPQTQQVLSHTILTPNYLKAAAKELRLLTKRTPSFRTLFRESGDVITQLLSPLSPDTGCTHPDLQEDLITTVLNLSIHDDNKKVFAEDPALISLLIDALKCGTIQTRSNAAAAIFTLSALDSNKLIIGKSGAIKHLLGLLDEGHPFAMKDAASAIFNLCLVHENKGRTVREGAVKVILNKIMDHILVDELLAILALLSSHPKAVEEMGDRGAVPFLLSIIRESTSERSKENCVAILYTICYSDRTTWKEIKEEEKANGTLSKLAQCGTSRAKRKATSILERVNRSPSLTHTA | 399 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car03g03099 | 399 | Pfam | U-box domain | 68 | 124 | IPR003613 | GO:0004842|GO:0016567 | |
| Car03g03099 | 399 | SMART | arm_5 | 185 | 226 | IPR000225 | GO:0005515 | |
| Car03g03099 | 399 | SMART | arm_5 | 227 | 267 | IPR000225 | GO:0005515 | |
| Car03g03099 | 399 | SMART | arm_5 | 307 | 348 | IPR000225 | GO:0005515 | |
| Car03g03099 | 399 | SUPERFAMILY | RING/U-box | 63 | 125 | - | - | |
| Car03g03099 | 399 | ProSiteProfiles | U-box domain profile. | 66 | 140 | IPR003613 | GO:0004842|GO:0016567 | |
| Car03g03099 | 399 | CDD | RING-Ubox_PUB | 71 | 113 | IPR045210 | - | |
| Car03g03099 | 399 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 65 | 133 | IPR013083 | - | |
| Car03g03099 | 399 | PANTHER | U BOX DOMAIN-CONTAINING | 7 | 125 | - | - | |
| Car03g03099 | 399 | PANTHER | U BOX DOMAIN-CONTAINING | 126 | 397 | - | - | |
| Car03g03099 | 399 | PANTHER | U-BOX DOMAIN-CONTAINING PROTEIN 9 | 7 | 125 | - | - | |
| Car03g03099 | 399 | PANTHER | U-BOX DOMAIN-CONTAINING PROTEIN 9 | 126 | 397 | - | - | |
| Car03g03099 | 399 | SUPERFAMILY | ARM repeat | 113 | 389 | IPR016024 | - | |
| Car03g03099 | 399 | Gene3D | - | 150 | 291 | IPR011989 | - | |
| Car03g03099 | 399 | Gene3D | - | 293 | 393 | IPR011989 | - | |
| Car03g03099 | 399 | SMART | Ubox_2 | 70 | 132 | IPR003613 | GO:0004842|GO:0016567 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Car03g03099 | Car-Chr3 | 75948031 | 75950260 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Car03g03099 | 126 | 399 | U-box Gene Family | AT3G07360 | 61.372 | 5.72e-113 | 332 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car03g03099 | - | - | gmx:100806619 | 587.8 |