Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g03094 ATGTTGAAGCTATCTCGCGCGCTTCGTTCATATTCCAGGCATCAACTATTGGAAGTGGTGTCGTCTACGAAAGTTGAAGTTGCGGGATTCTCTACTGCAACAAATAACTATTCTGCTAAAGGATATAATAATAATTATAATAGTTCAGATCGTATTTTTGCTCCTTATTCTGTTTACAAGGGAAAAGCTGCATTCTCACTCAGTCCTTGTCTTCCAACTTTCACTAAGTTGGATTCTGGGGCTCTTGTGGTTGAGCGTCGCGGTTCCATAATGATGAGTTTCATGCATGCTATTGGGGAGCACAAATATGACTGGGAGAAGAGACAAAGATTTGCTCTATCAGCTACTGAAGTTGGTTCTTTGATAGCCATTGGTCCCCAAGATTCATGTGAATTCTTTCATGACCCCTCAATGAAATCAAGTAATGCTGGCCAAGTAAGGAAGAACTTATCAATTAAGCCTCATAGCAATGGCTACTTTGTCTCTCTGAATGTTGTTAACATCGTTTTAAATACCAAAGACAGTTTCAGTGTTCCTGTTACAACTGCCGAGTTTGCTGTGATGAAGACAGCTTGCAGTTTTGCATTGCCACACATTATGGGTTGGGATCGTCTAACTAATCAGCAAATGCAGTCCAATGGGACAGTTGGCTTTCAATCGAAGACAAACCCACAAATTTTAGACTTGGAATGGGACAAGTGA 702 0.4074 MLKLSRALRSYSRHQLLEVVSSTKVEVAGFSTATNNYSAKGYNNNYNSSDRIFAPYSVYKGKAAFSLSPCLPTFTKLDSGALVVERRGSIMMSFMHAIGEHKYDWEKRQRFALSATEVGSLIAIGPQDSCEFFHDPSMKSSNAGQVRKNLSIKPHSNGYFVSLNVVNIVLNTKDSFSVPVTTAEFAVMKTACSFALPHIMGWDRLTNQQMQSNGTVGFQSKTNPQILDLEWDK 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g03094 233 Pfam Whirly transcription factor 58 190 IPR013742 GO:0003697|GO:0006355|GO:0006952
Car03g03094 233 Gene3D Transcriptional Coactivator Pc4; Chain A 43 215 IPR009044 GO:0003677|GO:0006355
Car03g03094 233 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 22 233 IPR013742 GO:0003697|GO:0006355|GO:0006952
Car03g03094 233 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 22 233 - -
Car03g03094 233 SUPERFAMILY ssDNA-binding transcriptional regulator domain 49 213 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g03094 Car-Chr3 75831172 75834829 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g03094 1 233 Whirly Transcription Factor Family AT1G71260 56.735 1.70e-88 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Car03g03094 Whirly 2.9e-52 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g03094 - - var:108343725 344.739