Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g03082 ATGACGAAGACTCCTTGTTGTGAAAGGATGGGAATGAGGAAAGGACCATGGAGTGATGAAGAAGATCAAATATTGATTTCTCATATTCAAACATATGGTCATGGAAATTGGCGTGCCCTTCCTAAACAAGCTGGTTTGTTAAGGTGTGGTAAGAGTTGTAGACTTCGTTGGAAAAATTATTTGAGACCAGATATCAAACGAGGAAAATTTAGCGACGAAGAAGAAGATTCAATCATAAAACTACATGAAATTCTCGGAAATAAATGGTCAACTATTGCAGCAAGATTACCCGGACGAACAGACAATGAAGTAAAAAACTTTTGGCATACTCATTTGAAGAAAAGGGTCCAAAAAAATAAAGTGCAAAATGCCAATACTTCTTACTCATATAATACTTTGCTAGATGCACAAGCAAGTGACGTTTCTAGTGTCGGTGAAAAAAGTGTTATTTCCAAATATTGTTTAGCCTCAACCAAGGAACCAAACATTGTAAGCCCAGGATTTTACAATGCAATATCTTGTGATACTTTAGGAGAAAATGTAGGTAATCATAGTTCAAGTCAGATTAGTGAAGAAATGGAATTTTGGTACAATGTATTCATTAAATCAGCGCAGCCATCATGA 624 0.3574 MTKTPCCERMGMRKGPWSDEEDQILISHIQTYGHGNWRALPKQAGLLRCGKSCRLRWKNYLRPDIKRGKFSDEEEDSIIKLHEILGNKWSTIAARLPGRTDNEVKNFWHTHLKKRVQKNKVQNANTSYSYNTLLDAQASDVSSVGEKSVISKYCLASTKEPNIVSPGFYNAISCDTLGENVGNHSSSQISEEMEFWYNVFIKSAQPS 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g03082 207 CDD SANT 69 112 IPR001005 -
Car03g03082 207 CDD SANT 16 61 IPR001005 -
Car03g03082 207 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Car03g03082 207 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Car03g03082 207 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Car03g03082 207 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Car03g03082 207 Gene3D - 68 137 - -
Car03g03082 207 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Car03g03082 207 Gene3D - 14 66 - -
Car03g03082 207 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Car03g03082 207 PANTHER MYB TRANSCRIPTION FACTOR 1 204 - -
Car03g03082 207 SMART sant 13 63 IPR001005 -
Car03g03082 207 SMART sant 66 114 IPR001005 -
Car03g03082 207 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Car03g03082 207 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g03082 Car-Chr3 75734059 75735396 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g03082 1 200 MYB Transcription Factor Family AT2G31180 45.532 7.15e-69 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car03g03082 Myb_DNA-binding 4.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g03082 K09422 - gmx:102663040 295.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g03082 03 75734059 75735396 Car03g03082 03 75734059 75735396 ECH