Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g03057 ATGGTAGTGAAAGTGAAAAGAGAAACGCTTGAAGCATGCATGACATGCCCTCTTTGTCATAAGCTTTTGAAAGATGCTACCACCATAtctctctgtcttcacacttTTTGCAGGAAGTGCATATATGAGAAACTTTCAGATGAAGAGACAGATTGCTGTCCGGTATGCAGCATTGATCTGGGCTGTCTTCCGGTGGAAAAGCTCAGGCCTGATCACAATCTGCAAGATATTAGGACCAAAATATTCCCTTTTAAACGAAAAAAGGTTAAAGCCCAAGAAGTTGTTCCCTCAACACCCCTTCCAGCAAAAAGGAAGGAAAGATCACTTTCATCATTGGTGGTTAGTGCTCCCAAAGTTTCAACACATACCGGCTTTACAGGAAAGAGAACAAAAACTGGTACAAGAAAGTCCGCTGCTTCACGTGGATGCAATTTTATCCCTGAAGGATCCATTAAGAGAGAAGAAACACATGATGAAGATACTCTGGCTTCTTCCTTAGCTGAGACTTCTAAGAAGCATAGAGTCAATGAAGATACGAACAACAATATGGACCTTACAGAAGGGAAGGTTGATCTCTGGACGCCTTTGAACTGTCTTGTTGAAGCCGCCAATAGAACAAAGTCCTCAAGGTTAAATTTACAAGGGACTCCTGTTGCCAAAATAGAATCTCCAGCTACTCCTCATGGTGGAATACAGATGTCTGAAATTGCAACCAAATCAGAGCTACCTACATATGTCCAGAGTGAACTGCACATGCCTAAAAGCAAAAACAAGAGTAATGGACATAAAACAAAGTTTGGAGATGACAAAGATGGAAACACCTTGCTTTCAGGACCGGTCAAGCGAAAAAGGTTGCGTCCTGCTAATCAGAAGAGAGCAGCAGCATCTGAGATGTCTGCCTCATCACAACTAGTGCTAAATGCAACAGGGAACAGATGCAACAGGAAAAATAGTCCTATTTGGTTTTCGTTAGTTGCTTCAGAAGACCAGAATGGAGATATTTCCTTGCCACAGATCTCGGCATGCTatttaagaataaaggatggtactgtgcctgtctcgtttattcaaaagtatcttgtgaagaaacttaatcttgctagcgaagcggagGTGGAAATAATGTGCCGGGGTCAGCCTGTGCTCCCAACTTTGCAAATGCATAACTTAGTAGATCTGTGGTTCTGCACGGCATCAACATCGAAAAGGCTACCGGCATCGGTTGGATCTTCGGCTAAGGACTTTGTGATGGTTTTATCAAATTGCGACGCAACGGCAGATTGCGTAGCGCCTAGGGGTCGCTACGGTGCTTTCGACGCTATTAACTTCAAAGGGCTTTTATTATTTAAGAATTGTGGTATTGCTTCCTTGCACAAAGACAAAGCCACCAGCAAATATGAATATGTCAAGTGTTTTGAACTTGAGGATGAGGTGATGTTTCCGAATTTCATCGTTGTTTGGATCGCTGCTTCTAAACATCACAAACCTTATAATGTAAATGATTTGAATTTGATGAACTCTTGTGCTGTTGCGGTGCTTGAAGAATATGCAGATGTAGTTCTTGCATATGGGTTTCGTGATGAGTATACCTTTGTTTTTAAGAAGACCACCAAGTTCTATGAAAGGCGTGCTAGCAAAGTATTATCCATTATTTCTTCTTTTTTCTCATCTGTATTTGTGAGAAAATGGCGTAAATTCTACCCACAGAAGGAACTACTTTCTCCACCTTCCTTCCATGGGAAAGTCGTAGCTTGTGCATCCATAGATGCCCTTCAAGCATACCTTTTGTGGAGGCAAAATATCTGTCATTTGAACAATCAATATGATCAATGCTTTTGGCGACTTGTCGAACGCGGAATGAGTGAGACAGAAGCACATGATTTCATCAATGGTGCTAAGAAACGCGACTTAAATGATATTTTGTTTGACGAGTTCAATGTCAATTACAATACACTGGATCCAATATTCCGACAAGGTTCCTGTGTTTTAAAGACAATGGTAGGGGATGTGGTGAAGTTCGCAGAAAATGGTGCTCCGATTGAAAGGCAAAGGAGAAAGATAATCACAGTGCATTCCAAGAAAATAGCAAGCACAAGATTTTGGAATGAGCATAGTATTCTTTTGAAGGAGCTTGGTGTTTTTGTGGAGGAGATTAACAATGTGAAACCGGAGTATGTGAGGTCCTTTGAATTTGACAGCAAGTTGATGCCATCTACATGGGTTGTAGTTCGGATCGATGGATGCCACTTCCACAGATTTTCTGAGATACACGAATTTGTGAAACCAAATGATGAAAGAGCTCTTAACTTGATGAATTCATGTGCAGTGGCTGTCTTGGAAGAATTTAGGCAGGATATAGTTTTTGCTTATGGGGTTAGCGACGAGTACAGTTTCATTCTTAAGAAATCCACTAATCTTTATCAAAGGAGAGCTAGTAAAATCATTTCAGCTATTGTGTCTTTCTTTACATCCACTTATGTGATGAGATGGAAAGATTTCTTCCCTCAAAGTGAGTTAAACTACCTTCCATCTTTCGATGGACGAGCAGTGTGCTATCCATCTGCCGAGATCGTACGAGACTATCTGTCGTGGAGGCAAGTCGATTGCCACATAAACAATCAATATAACTCTTGTTTCTGGAAGCTTGTTGCATCTGGAAAAAGCAAAAGGGAAGCTCAACGTAGTTTAAAGGGCGCACAACTGCAGAAGAAAATCGAGGAATTGGCTATTGACTACAACCAATTGCCAGTGATGTTCCGACAAGGATCCTCAGTTTTTTGGGATAGGGTAGACAATGTTCTCATCTATCAGGAGAATGGAAAGTCTTCTGAAAGTTATGGAAATGTCATTGTAGAACATATTGACATCATTGGTTCATCAGCCTTTTGGTTACAACACCCAGACATCCTTGATGAAAAGCTATATGTGTGGAAGAAATGTTGA 2943 0.3962 MVVKVKRETLEACMTCPLCHKLLKDATTISLCLHTFCRKCIYEKLSDEETDCCPVCSIDLGCLPVEKLRPDHNLQDIRTKIFPFKRKKVKAQEVVPSTPLPAKRKERSLSSLVVSAPKVSTHTGFTGKRTKTGTRKSAASRGCNFIPEGSIKREETHDEDTLASSLAETSKKHRVNEDTNNNMDLTEGKVDLWTPLNCLVEAANRTKSSRLNLQGTPVAKIESPATPHGGIQMSEIATKSELPTYVQSELHMPKSKNKSNGHKTKFGDDKDGNTLLSGPVKRKRLRPANQKRAAASEMSASSQLVLNATGNRCNRKNSPIWFSLVASEDQNGDISLPQISACYLRIKDGTVPVSFIQKYLVKKLNLASEAEVEIMCRGQPVLPTLQMHNLVDLWFCTASTSKRLPASVGSSAKDFVMVLSNCDATADCVAPRGRYGAFDAINFKGLLLFKNCGIASLHKDKATSKYEYVKCFELEDEVMFPNFIVVWIAASKHHKPYNVNDLNLMNSCAVAVLEEYADVVLAYGFRDEYTFVFKKTTKFYERRASKVLSIISSFFSSVFVRKWRKFYPQKELLSPPSFHGKVVACASIDALQAYLLWRQNICHLNNQYDQCFWRLVERGMSETEAHDFINGAKKRDLNDILFDEFNVNYNTLDPIFRQGSCVLKTMVGDVVKFAENGAPIERQRRKIITVHSKKIASTRFWNEHSILLKELGVFVEEINNVKPEYVRSFEFDSKLMPSTWVVVRIDGCHFHRFSEIHEFVKPNDERALNLMNSCAVAVLEEFRQDIVFAYGVSDEYSFILKKSTNLYQRRASKIISAIVSFFTSTYVMRWKDFFPQSELNYLPSFDGRAVCYPSAEIVRDYLSWRQVDCHINNQYNSCFWKLVASGKSKREAQRSLKGAQLQKKIEELAIDYNQLPVMFRQGSSVFWDRVDNVLIYQENGKSSESYGNVIVEHIDIIGSSAFWLQHPDILDEKLYVWKKC 980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g03057 980 Gene3D - 302 405 - -
Car03g03057 980 Gene3D - 718 974 IPR038469 -
Car03g03057 980 Gene3D - 461 711 IPR038469 -
Car03g03057 980 Pfam Thg1 C terminal domain 857 936 IPR025845 -
Car03g03057 980 Pfam Thg1 C terminal domain 591 671 IPR025845 -
Car03g03057 980 ProSitePatterns Zinc finger RING-type signature. 32 41 IPR017907 -
Car03g03057 980 Pfam tRNAHis guanylyltransferase 466 584 IPR024956 GO:0000287|GO:0006400|GO:0008193
Car03g03057 980 Pfam tRNAHis guanylyltransferase 724 853 IPR024956 GO:0000287|GO:0006400|GO:0008193
Car03g03057 980 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 2 423 IPR044807 GO:0004842
Car03g03057 980 MobiDBLite consensus disorder prediction 121 183 - -
Car03g03057 980 Pfam Zinc finger, C3HC4 type (RING finger) 16 56 - -
Car03g03057 980 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 104 IPR013083 -
Car03g03057 980 PANTHER UBIQUITIN PROTEIN LIGASE DRIP2, PUTATIVE-RELATED 2 423 - -
Car03g03057 980 MobiDBLite consensus disorder prediction 121 139 - -
Car03g03057 980 MobiDBLite consensus disorder prediction 148 180 - -
Car03g03057 980 MobiDBLite consensus disorder prediction 251 296 - -
Car03g03057 980 SUPERFAMILY RING/U-box 9 80 - -
Car03g03057 980 ProSiteProfiles Zinc finger RING-type profile. 16 57 IPR001841 -
Car03g03057 980 SMART ring_2 16 56 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g03057 Car-Chr3 75523966 75533045 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g03057 1 347 C3H Transcription Factor Family AT2G30580 44.959 1.39e-78 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g03057 K10761 - gmx:100802539 856.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g03057 03 75523966 75533045 Car04g00320 04 3276774 3281163 ECH
Car04g00147 04 1464061 1468376 Car03g03057 03 75523966 75533045 ECH
Car03g03057 03 75523966 75533045 Car03g03057 03 75523966 75533045 ECH