Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g03042 ATGTTGAGTAGAGTGGGTGGTGGGAATAGCAAAGTAGGAAAAATGTTGGATGGAGAAGCAGAGGAGGAGTATGATAGTAATTTGTCAGTCCAATATTCAATTTCATCATCAAACAATCACATAACCTTTAATCCTTCCACTATTTCTCATTCTCATCATCAATATCAATTCCTCCCACACCTTCAAACAAACCTCTTTCCTCAGATCCAAAcacaaccaccaccaccgccgccgccaccGTTCATCCATTCAGCTTCCGCCTGGACCGACGAGGAGCTTCTCGCACTCTTCAACATCAGATCTACCATCCACAATTCCTTTCCAGATCAACTCACTTGGGACCATGTCTCAAGGAAGCTAGCAGAGCTTGGGTTTAAAAAAAGTGCTGAAAAGTGTAAGGAGAAATTTGAAGATGAAAACAGATCATATTTCAAGAATATTGATAGTTATCGGTTTGTTAGTGAGCTACAAGGACTTTATGATCAATGTCATGATGATCATGGTGATGTTGTTACCAAAGATGAAAATTCAAAGGACATTGTCATGACAAAACAatgtggtgatgatgatgatgatgagaaggtgatATTGGAAAAATCaaaggaaataagaaagagaaagaggagagatagGTTTGAAATGTTCAAGTGTTTTTGTGAGAGTGTTGTGAACAACATGATGTCACAACAAGAACAAATACACAACAAACTACTTGAAGACATTCTCAAAAGAGATGAAGAAAAGGTTGCTAAAGAAGAAGCATGGAAAAAGCAAGAAATGGAAAGAATGAACAAGGAGCTTGACATCATGGCACAAGAACAAGCTATTGCAAATGATAGACAAGCCAACATTATTCAATTCTTCAACAAATATCTAAATGGAAACAACAAAAGTTCAAAAGGttgttcttcttcttctccttctcctcctactCAATTGCACTCACAAAACCCTAATTATGATCTTCCTTCTACAAGAAACAACAACAATCTTGAATCATCAACAACACCTTGTTCTAATTCTAATATTATGATAGAAGAAAACCCTAGCTCAAGTGACAATGTAGTAGTAGTAGTACCATTACAACAAGTTCCTTCTTCTTCTTCCAATAATAATAATAATCCAATATTAGAGTCAAATTCCACAAGTACCCTTGTTGATTCAAGAATGGAGGATATTAAGAGAAGGTGGCCAAGAGATGAAGTGTTGGCATTGATAAACCTAAAGTGTATAAGTTCAaacaacaataataatgttgaagaaaaggaaggaaataataataataataatgataataaGGGACCTTTGTGGGAGAGAATATCTCAAGGGATGTTAGAGTTGGGATACAAGAGAAATGCAAAGAGGTGTAAAGAAAAATGGGAAAACATAAACAAGTATTTTAGAAAGACAAAAGATGTTGTGAGTAAGAAGAAAAGGTCATTGGATTCTAGGACCTGTCCTTATTTTCATCAACTTAGTTGTTTGTATAATAAGCAGCAGGAGAAGCAGGGAGGAGGAAAACTAATTTCTCTTCAtccaaacataaattcagctcatcaatcttctgattctccagtggcttctggtaattaa 1593 0.3051 MLSRVGGGNSKVGKMLDGEAEEEYDSNLSVQYSISSSNNHITFNPSTISHSHHQYQFLPHLQTNLFPQIQTQPPPPPPPPFIHSASAWTDEELLALFNIRSTIHNSFPDQLTWDHVSRKLAELGFKKSAEKCKEKFEDENRSYFKNIDSYRFVSELQGLYDQCHDDHGDVVTKDENSKDIVMTKQCGDDDDDEKVILEKSKEIRKRKRRDRFEMFKCFCESVVNNMMSQQEQIHNKLLEDILKRDEEKVAKEEAWKKQEMERMNKELDIMAQEQAIANDRQANIIQFFNKYLNGNNKSSKGCSSSSPSPPTQLHSQNPNYDLPSTRNNNNLESSTTPCSNSNIMIEENPSSSDNVVVVVPLQQVPSSSSNNNNNPILESNSTSTLVDSRMEDIKRRWPRDEVLALINLKCISSNNNNNVEEKEGNNNNNNDNKGPLWERISQGMLELGYKRNAKRCKEKWENINKYFRKTKDVVSKKKRSLDSRTCPYFHQLSCLYNKQQEKQGGGKLISLHPNINSAHQSSDSPVASGN 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g03042 530 SMART sant 393 466 IPR001005 -
Car03g03042 530 SMART sant 84 142 IPR001005 -
Car03g03042 530 ProSiteProfiles Myb-like domain profile. 389 464 IPR001005 -
Car03g03042 530 PANTHER TRIHELIX TRANSCRIPTION FACTOR GTL2 85 504 - -
Car03g03042 530 MobiDBLite consensus disorder prediction 297 349 - -
Car03g03042 530 MobiDBLite consensus disorder prediction 506 530 - -
Car03g03042 530 PANTHER - 85 504 - -
Car03g03042 530 Coils Coil 260 280 - -
Car03g03042 530 MobiDBLite consensus disorder prediction 364 383 - -
Car03g03042 530 MobiDBLite consensus disorder prediction 415 435 - -
Car03g03042 530 Gene3D - 397 469 - -
Car03g03042 530 Gene3D - 88 145 - -
Car03g03042 530 MobiDBLite consensus disorder prediction 513 530 - -
Car03g03042 530 Pfam Myb/SANT-like DNA-binding domain 87 148 IPR044822 -
Car03g03042 530 Pfam Myb/SANT-like DNA-binding domain 395 492 IPR044822 -
Car03g03042 530 CDD GT1 395 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g03042 Car-Chr3 75421991 75424322 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g03042 88 498 Trihelix Transcription Factor Family AT5G28300 37.320 9.53e-85 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Car03g03042 Myb_DNA-bind_4 1.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g03042 - - cam:101498587 920.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g03042 03 75421991 75424322 Car03g03042 03 75421991 75424322 ECH
Car03g03042 03 75421991 75424322 Car04g00479 04 4918402 4921416 PCT