Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g03017 ATGGGATGTGTGATTGGTCGTGAAGCGTCGTCTGGAATAATCTCCGAGAAGAAGGGTTCGGGTGATGAAAGTAACCGGAAAGTCGATGAAGCTTCGGCGGAGGCGGCGAGTAACGGTGAGGGGAATACGGTGGTAGAGGTTGATAATGGTGGTGATAGGGTTCAGCGAAGTGAAAGAAGAAGATCAAAGGCGAATCCAAGGCTAAGTAATCCGCCGAAGCATTTACATGGGGAGCAGGTTGCTGCTGGATGGCCACCTTGGCTCACTGCAGTGTGTGGAGAAGCTCTCAATGGTTGGATTCCGCGAAAGGCTGATACCTTTGACAAAATTGATAAGATTGGGCAAGGAACTTATAGTAATGTGTACAAAGCTAAAGACATGTTGACTGGTAAAATTGTTGCTATGAAGAAGGTTCGATTCGACAATTTGGAACCTGAGAGCGTTAAATTCATGGCTAGAGAGATTCTTATTCTGCGAAGGTTGGATCATCCAAATGTTATTAAGTTGCAAGGTTTAGTTACATCAAGGATGTCCTGTAGTTTGTATTTGGTGTTCGATTACATGGAGCATGATTTAGCTGGACTTGCTGCAAGCCCGGGAATCGGGTTTACAGAGCCTCAGATAAAATGTTACATGCATCAGCTGCTATCAGGACTAGAGCATTGTCATAACCGTCATGTACTTCACCGTGATATCAAAGGATCAAATCTTCTTATTGACAACGAAGGAGTACTTAAGATTGCTGACTTTGGATTGGCATCCTTGTTTGATCCAAACCATAGGCATCCCATGACTAGTCGTGTAGTAACACTTTGGTATCGGCCGCCTGAGTTGCTTCTAGGTGCCACATATTATAGTGTGGGTGTAGACCTTTGGAGTGCTGGATGTATTTTAGGAGAGTTATTGGCTGGGAAACCAATTATGCCCGGCCGTACAGAGGTGGAGCAACTGCACAAGATATACAAACTATGTGGTTCACCTTCTGATGAATACTGGAAGAAGTCAAAGTTGCCCAATGCTACCTTGTTCAAACCTCGAGAGCCATACAAGAGATGCATAAGAGAGACATTCAAAGGTTTTCCACCGTCTGCTCTACCCCTTATTGATACTCTTCTTGCAATTGATCCTGTTGAGCGGAAACACGCCTCAGATGCTTTAAGAAGTGAGTTCTTTACCACAGAACCGTATGCTTGCGATCCTTCTAGTCTTCCAAAGTACCCCCCAAGCAAAGAAATGGATGCTAAAAGACGGGATGATGAAGTTAGGAGacaaagagctgcaagcaaagctCAGGTTGATGGTCCAAAGAAGCATAGAACACGAGATCGTGCTGTGAAAGCTTTTCCTGCTCCCGAAGCCAATGCCGAGCTTCAATCCAATATTGATAGAAGACGTCTAATCACTCATGCAAATGCCAAGAGCAAGAGTGAAAAGTTCCCTCCGCCACATCAAGATGGACAACTTGGTTTTCCTTTGGGATCTTCACATCATATTGATCCAGAAACTGTTCCTTCTGATGTCTCTTTTACTTCAACCACATATACCTATTCAAAGGAACCATTTCAAGCTTGGTCGGGTCCAATTGGTAATGCTGCTGATATTGGAGTGCCGAAGCGGAAGAAACACACAGCAGGAGAGGCATGGGATTTATCAAAACCACATAAAGGCGCCCCCAAGGATAAGTTTAAAGGAAAGGGAATTATAGCTTAG 1710 0.4386 MGCVIGREASSGIISEKKGSGDESNRKVDEASAEAASNGEGNTVVEVDNGGDRVQRSERRRSKANPRLSNPPKHLHGEQVAAGWPPWLTAVCGEALNGWIPRKADTFDKIDKIGQGTYSNVYKAKDMLTGKIVAMKKVRFDNLEPESVKFMAREILILRRLDHPNVIKLQGLVTSRMSCSLYLVFDYMEHDLAGLAASPGIGFTEPQIKCYMHQLLSGLEHCHNRHVLHRDIKGSNLLIDNEGVLKIADFGLASLFDPNHRHPMTSRVVTLWYRPPELLLGATYYSVGVDLWSAGCILGELLAGKPIMPGRTEVEQLHKIYKLCGSPSDEYWKKSKLPNATLFKPREPYKRCIRETFKGFPPSALPLIDTLLAIDPVERKHASDALRSEFFTTEPYACDPSSLPKYPPSKEMDAKRRDDEVRRQRAASKAQVDGPKKHRTRDRAVKAFPAPEANAELQSNIDRRRLITHANAKSKSEKFPPPHQDGQLGFPLGSSHHIDPETVPSDVSFTSTTYTYSKEPFQAWSGPIGNAADIGVPKRKKHTAGEAWDLSKPHKGAPKDKFKGKGIIA 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g03017 569 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Car03g03017 569 CDD STKc_CDK9_like 107 391 - -
Car03g03017 569 SUPERFAMILY Protein kinase-like (PK-like) 102 398 IPR011009 -
Car03g03017 569 Gene3D Phosphorylase Kinase; domain 1 94 189 - -
Car03g03017 569 ProSitePatterns Protein kinases ATP-binding region signature. 113 136 IPR017441 GO:0005524
Car03g03017 569 MobiDBLite consensus disorder prediction 409 441 - -
Car03g03017 569 ProSiteProfiles Protein kinase domain profile. 107 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car03g03017 569 MobiDBLite consensus disorder prediction 535 562 - -
Car03g03017 569 MobiDBLite consensus disorder prediction 1 78 - -
Car03g03017 569 Gene3D Transferase(Phosphotransferase) domain 1 190 431 - -
Car03g03017 569 SMART serkin_6 107 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car03g03017 569 Pfam Protein kinase domain 108 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car03g03017 569 MobiDBLite consensus disorder prediction 526 569 - -
Car03g03017 569 MobiDBLite consensus disorder prediction 399 441 - -
Car03g03017 569 PANTHER CELL DIVISION PROTEIN KINASE 52 546 - -
Car03g03017 569 MobiDBLite consensus disorder prediction 51 65 - -
Car03g03017 569 PANTHER OS01G0367700 PROTEIN 52 546 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g03017 Car-Chr3 75235445 75240793 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g03017 99 431 Core Cell Cycle Gene Families AT5G10270 52.149 6.15e-120 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Car03g03017 Pkinase 5.6e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g03017 K08819 - gmx:100786837 1019.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g03017 03 75235445 75240793 Car03g03017 03 75235445 75240793 ECH
Car03g03017 03 75235445 75240793 Car04g00505 04 5156644 5162231 PCT