Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02996 ATGTGTTTACCCGAGGAACATAGAGAAAGAGAAATAACCATGGCACTAGAAGCAACAACACTACTATACCCACAACTACAACAACAAGACCCTTTTAGCTACGGTTTGAAAGACCCTTTTAGCTACAACTTTGAACATGAAGAACAAAGTTCTATTTGTAGTTTTTTCAAGAATAACCAAATAGATAATTATCCTTATGGAAATTGGAGTAGTAATAATTGTTCACAACCACAATCATTGTTGCTACAAATGGATGAAGATTTGTCAAATCCATCTTTAGATAGTTCAATTTTAACTAATTCTCGTCCCAAAAAACGAAGAGTCAAAACAAGGAAGAACAAAGAAGAAATTGAGAATCAAAGAATGACTCACATTGCTGTAGAACGTAACAGAAGAAAGCAAATGAATGAGTATCTCTCTGTTCTTCGCTCTCTCATGCCTGAATCTTACGTTCAAAGGGGTGATCAAGCATCTATTATTGGTGGCGCTATTAACTTTGTTAAGGAACTTGAACAGAAGCTACAATTTCTTGGTGTTGAGAAAGAAAAAGAGGGTAAATCTGAAACCGTTGCAAATACAAAAATACCCTTTTCTGAGTTTTTCACATTTCCACAATACTCAACAAGTGGTAATAATAACTGTGAGAGTTCTGAGTCAAATATGGGTGAAGTTCAATCTAGCATTGCTGATATTGAAGTGACAATGGTAGAAAGCCATGCAAATCTCAAAATAAGATCAAAGAAAAGGCCAAAACAGCTCTTGAAGATTGTCTCAAATTTGCATGGCATGTGTCTCACAATCTTGCACCTTAATGTCACTACATCTGCTGAATTTGTTCTTTATTCTCTTAGTGTTAAGGTGGAAGATGATTGCAAGCTTGGATCAGTGGATGAGATAGCTGCAGCTATATATCAAATGCTAGAAAGGATTCAACAAGAGTCAATAATGAATTAA 954 0.3522 MCLPEEHREREITMALEATTLLYPQLQQQDPFSYGLKDPFSYNFEHEEQSSICSFFKNNQIDNYPYGNWSSNNCSQPQSLLLQMDEDLSNPSLDSSILTNSRPKKRRVKTRKNKEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPESYVQRGDQASIIGGAINFVKELEQKLQFLGVEKEKEGKSETVANTKIPFSEFFTFPQYSTSGNNNCESSESNMGEVQSSIADIEVTMVESHANLKIRSKKRPKQLLKIVSNLHGMCLTILHLNVTTSAEFVLYSLSVKVEDDCKLGSVDEIAAAIYQMLERIQQESIMN 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02996 317 Gene3D - 108 195 IPR036638 GO:0046983
Car03g02996 317 PANTHER MAX DIMERIZATION, MAD 14 317 - -
Car03g02996 317 SMART finulus 125 176 IPR011598 GO:0046983
Car03g02996 317 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 14 317 - -
Car03g02996 317 Pfam Helix-loop-helix DNA-binding domain 120 171 IPR011598 GO:0046983
Car03g02996 317 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 119 170 IPR011598 GO:0046983
Car03g02996 317 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 119 182 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02996 Car-Chr3 75063302 75064713 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02996 14 287 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 47.712 9.30e-71 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car03g02996 HLH 7.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02996 - - gmx:100782243 400.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02996 03 75063302 75064713 Car03g02996 03 75063302 75064713 ECH
Car03g02996 03 75063302 75064713 Car04g00529 04 5332118 5334049 PCT