Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02970 ATGTATGCTTCGGTAGCAGATAGGGGATATGAAGGGAGTGGCGGAGGTTCAGGACCTATTTTGATTCCGAAGCGTTTTGTTTGGCCTTATGGAGGAAGAAGAGTGTTTCTCAGTGGTTCTTTCACGAGATGGTCAGAGCATATACCTATGTCTCCGATGGAAGGATGTCCTTCTGTGTTTCAGGTTATTTGCAGCTTGATGCCGGGATATCATCAGTACAAATTTAACGTGGATGGCGAGTGGCGGCATGATGAGCAGCAGCCATTTGTAAGTGGGAACTATGGAGTAGTAAATACTATTTATTTAGTGAGAGAACCAGATATTTTACCTTCCATCTTAAGTGCTGAAACACCCAGTAGGTCCCACATGGAGGTTGACAATGATGTCTTTGGGCATGCAGTGCCAGAAGCTAATCCAAGGATGTCAGAGTCTGATCTGGAGGTCTCTCGCCACCGTACATCTGTATTCTTGTCTACACATACTGCGTATGAATTGCTTCCTGAGTCTGGGAAGGTCATTGCGTTGGATATAAATTTACCAGTTAAGCAAGCATTCCATGTTCTGTATGAACAGGATGTATCTATGGCCCCGCTATGGGATTTTTGCAAGAGTCGGTTTGTTGGAGTGCTTAGTGCAATGGACTTCATTCTCATATTGAAAGAGTTGCGGAATCATGGATCAAATTTGACTGAAGAACAACTTGAGACTCACACTATAGCAGCCTGGAAAGAGGGAAAATTGAAGCTACACAGGACACTTGATAATAATGCGGTATCAAGTCCTCATTGTTTTGTACATGCTGGGCCCCATGAATGCCTAAAAGACGTGGCTTTAAAGGTTTTACAAAACAATGTGTCAACGGTTCCTATCATTCATTCTTCTTCGGAGGATGGTTCATTTCCCCAACTGCTTCATCTTGCTTCCCTATCAGGAATTCTAAAATGTATATGCAGGCATTTTAAGCACTCTGCTGGCTCTTTGCCCATTCTTCAACTTCCGATTGGTTCAATACCTTTGGGTACGTGGGTGCCTAAAGTTGGGGATCCAAATGGACAGCCACTTGCAATGCTAAGGCCAAATGCTTCTCTTGGTGCTGCCCTGTCGATGTTTGTTCAAGCTAAAGTTAGCTCAATACCAATTGTGGATGATAATGATTCATTGCTTGACATATATTCAAGAAGTGATATTACTGCATTGGCTAAAGATAAAGCATATGCTCGGATATCTCTGGACGAAATTAGTATTCATCAGGCATTACTTTTGGGACAAGATGCTAATTCTCCGTATGGGCTCTACAATGGCCACAGATGTCATATGTGTTTGAGGTCTGATTCGTTGCACAAAGTGATGGAGCGGTTGGCTAGTCCTGGGGTTAGGAGACTTGTGATCGTGGAGGCTGGTAGCAAGCGTGTGGAAGGGATTATTTCATTAAGTGATGTGTTCAGATTCTTATTGGGCTAG 1461 0.4333 MYASVADRGYEGSGGGSGPILIPKRFVWPYGGRRVFLSGSFTRWSEHIPMSPMEGCPSVFQVICSLMPGYHQYKFNVDGEWRHDEQQPFVSGNYGVVNTIYLVREPDILPSILSAETPSRSHMEVDNDVFGHAVPEANPRMSESDLEVSRHRTSVFLSTHTAYELLPESGKVIALDINLPVKQAFHVLYEQDVSMAPLWDFCKSRFVGVLSAMDFILILKELRNHGSNLTEEQLETHTIAAWKEGKLKLHRTLDNNAVSSPHCFVHAGPHECLKDVALKVLQNNVSTVPIIHSSSEDGSFPQLLHLASLSGILKCICRHFKHSAGSLPILQLPIGSIPLGTWVPKVGDPNGQPLAMLRPNASLGAALSMFVQAKVSSIPIVDDNDSLLDIYSRSDITALAKDKAYARISLDEISIHQALLLGQDANSPYGLYNGHRCHMCLRSDSLHKVMERLASPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02970 486 SUPERFAMILY CBS-domain pair 153 322 IPR046342 -
Car03g02970 486 SUPERFAMILY E set domains 22 104 IPR014756 -
Car03g02970 486 Pfam Glycogen recognition site of AMP-activated protein kinase 22 107 IPR032640 -
Car03g02970 486 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 13 486 - -
Car03g02970 486 ProSiteProfiles CBS domain profile. 165 227 IPR000644 -
Car03g02970 486 SUPERFAMILY CBS-domain pair 352 485 IPR046342 -
Car03g02970 486 ProSiteProfiles CBS domain profile. 347 407 IPR000644 -
Car03g02970 486 Gene3D Immunoglobulins 20 104 IPR013783 -
Car03g02970 486 Gene3D - 142 325 IPR046342 -
Car03g02970 486 PANTHER CBS DOMAIN, IMMUNOGLOBULIN E-SET-RELATED 13 486 - -
Car03g02970 486 SMART cbs_1 436 485 IPR000644 -
Car03g02970 486 SMART cbs_1 353 401 IPR000644 -
Car03g02970 486 SMART cbs_1 171 220 IPR000644 -
Car03g02970 486 Pfam CBS domain 353 397 IPR000644 -
Car03g02970 486 Pfam CBS domain 437 485 IPR000644 -
Car03g02970 486 CDD E_set_AMPKbeta_like_N 25 103 - -
Car03g02970 486 Gene3D - 332 486 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02970 Car-Chr3 74877151 74883013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02970 31 93 Protein tyrosine phosphatase (PTP) family AT3G52180 35.938 4.62e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02970 - - gmx:100814655 818.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02970 03 74877151 74883013 Car03g02970 03 74877151 74883013 ECH
Car03g02970 03 74877151 74883013 Car04g00551 04 5520346 5531583 PCT