Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02940 ATGTTTGAAGGAGAAGATTCTCAGAAGAAGAGGAGAATCGCCATTATTGGCGTCTCAACCATTCTATTAGTAGCCATGGTTGTGGCAGCCACAGTAAGCGTCGGCTTCGGCAAAAACGTGGAAGCAGAGGATGCTTCTAAAGATTCTCACATTTCTTCATCCGTTAAAGCCGTTCAAACCATTTGCGAACCAACCGATTACAGAAAAGAATGTGAGGAAAGTCTAACAGCACAAGCCGGTAACATAACAGATCCAAGAGAACTCGTCAAAATCGCATTCAACATTACCATCACCAAAATCAGCGACGGACTTTCAAAAACACAACTCCTTCACGAGGTTGAAAGTGACGAAAGAACTAAGGAAGCACTTGACACGTGTAAACAACTCATGAACCTTTCTATTGATGAATTCAAAAGATCATTAGAAAAGTTTAGTAATTTTGACCTTAATAACCTCGACAGAGTGCTCACAAGTTTAAAGGTTTGGTTAAGTGGGGCCATTACATATCAAGAAACTTGTTTAGATGCATTTGAAAATACCACTACCAATGCTGGTGAAAAAATGAAAGAGATTTTGCAAACCGCTATGCATATGAGTAGTAACGGTCTTTCAATAATTAACGAACTTTCAAAAACATTCACTGAGATGAAACCTGCGGGTCGTAGACTATTGAAGGATGATGGAGAATTGCATGTTGTTGGTCGTGGTGATTTTGAGTTTCCTGAATGGGTTGATGACCGTGTTGGTGTTAGAAAATTGCTTAAAATGACTGGAAGAAAACTTCAAGCTCATGTTGTTGTTGCTAAAGATGGAACTGGAAATTTCACTACAATTAATGAGGCTCTTAAGCATGTTCCCAAGAAAAACTTGAGACCTTTTGTTATTTATATCAAGGAGGGTATTTATAATGAGTATGTTGAAGTTTCTAGAAACATGACTCATGTTGTTTTTATTGGTGATGGTGGTAGGAAGTCACGTATCACTGGTAACAAAAACTTCATCGATGGTGTTGGTACTTACAGAACCGCCACTGTTGCTATTCTTGGAGATTTCTTCGTTGGTATTGGTATTGGATTTGAAAACTCTGCTGGTCCTGAAAAGCATCAAGCAGTTGCATTGAGAGTCCAAGCTGACAGATCAATCTTCTACAAATGCAGAATGGACGGATACCAAGACACACTTTACGCACACACCATGCGTCAATTCTACCGCGATTGTGTTATCACAGGTACCATTGACTTTGTCTTCGGCGATTCCGTTGCAGTTCTCCAAAACTGCACTTTCGTCGTAAGAAAGCCATTGGAAAACCAACAGTGCATTGTGACCGCACAAGGTAGAAAAGAAAGAAACCAACCATCAGGATTAATCATCCAAGGAGGTTCAATTGTATCAGATCCTAAATACTTTCCAGTTAGATTCGACAACAAGGCCTATTTGGCTCGTCCATGGAAAAATTTCTCAAGAACAATTTTCATGGATACTTACATTGGTGATTTAATCACACCTGATGGTTATATGCCATGGCAAACAATTGAAGGTATTACAGGAACTGAAACTTGTTACTATGCTGAGTACAATAACCGTGGACCTGGTTCTGATATTACCAAGCGTGTTAAATGGGAAGGTGTTAAAACAATTACATCAGAAGGAGCAAATACTTTCTTGCCAACAGCTTTCTTCCATGGAGATGATTGGATTAGAGTTACTAGGGTTCCTTATTATCCTGGTGGGGCTGCTCCTAGTAGAACCCGGACTCATTGA 1761 0.3969 MFEGEDSQKKRRIAIIGVSTILLVAMVVAATVSVGFGKNVEAEDASKDSHISSSVKAVQTICEPTDYRKECEESLTAQAGNITDPRELVKIAFNITITKISDGLSKTQLLHEVESDERTKEALDTCKQLMNLSIDEFKRSLEKFSNFDLNNLDRVLTSLKVWLSGAITYQETCLDAFENTTTNAGEKMKEILQTAMHMSSNGLSIINELSKTFTEMKPAGRRLLKDDGELHVVGRGDFEFPEWVDDRVGVRKLLKMTGRKLQAHVVVAKDGTGNFTTINEALKHVPKKNLRPFVIYIKEGIYNEYVEVSRNMTHVVFIGDGGRKSRITGNKNFIDGVGTYRTATVAILGDFFVGIGIGFENSAGPEKHQAVALRVQADRSIFYKCRMDGYQDTLYAHTMRQFYRDCVITGTIDFVFGDSVAVLQNCTFVVRKPLENQQCIVTAQGRKERNQPSGLIIQGGSIVSDPKYFPVRFDNKAYLARPWKNFSRTIFMDTYIGDLITPDGYMPWQTIEGITGTETCYYAEYNNRGPGSDITKRVKWEGVKTITSEGANTFLPTAFFHGDDWIRVTRVPYYPGGAAPSRTRTH 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02940 586 TIGRFAM PME_inhib: pectinesterase inhibitor domain 54 209 IPR006501 GO:0004857
Car03g02940 586 ProSitePatterns Pectinesterase signature 1. 289 308 IPR018040 -
Car03g02940 586 ProSitePatterns Pectinesterase signature 2. 408 417 IPR033131 -
Car03g02940 586 SUPERFAMILY Pectin lyase-like 262 575 IPR011050 -
Car03g02940 586 CDD PMEI-like_3 60 211 - -
Car03g02940 586 Gene3D Invertase/pectin methylesterase inhibitor family protein 53 211 IPR035513 -
Car03g02940 586 SMART PMEI_2 53 205 IPR006501 GO:0004857
Car03g02940 586 Pfam Pectinesterase 264 563 IPR000070 GO:0030599|GO:0042545
Car03g02940 586 Pfam Plant invertase/pectin methylesterase inhibitor 57 205 IPR006501 GO:0004857
Car03g02940 586 PANTHER PECTINESTERASE 13 579 - -
Car03g02940 586 PANTHER PECTINESTERASE 13 579 - -
Car03g02940 586 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 57 210 IPR035513 -
Car03g02940 586 Gene3D - 258 577 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02940 Car-Chr3 74647061 74649573 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02940 5 576 Carbohydrate Esterase AT3G05610 49.220 0.0 602
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02940 K01051 - gmx:100801686 943.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02940 03 74647061 74649573 Car04g00577 04 5775406 5777296 PCT