Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02939 ATGGCCATGCTTGTTAATTGCCTTTTCATTCTCATCCTTTTACCATCATTTGATAAAGTACTTTCATTCCAAGATGAAATTCCCTCAGAAATCCAAACACAAGACATGCAAGCTTTGATTGCTCAAGCCTGCATGGATATCGAAAACCAAAACTCATGCCTCACAAATATTCAAAACGAGTTAACGAAAACCGGCCCTCCAAGTCCAACTTCAGTCATCAGTGCTGCACTCAGAACCACAATCAATGAAGCCATAGGTGCCATCAATAACATGACAAAGATCAGTACTTTTTCTGTTAATAACCGCGAGCAACTAGCCATAGAAGATTGCAAGGAGCTTATTGATTTCTCTGTGTCAGAGCTAGCATGGTCATTAGGTGAGATGAGGAGAATTCGAGCAGGCGATAGAAATGCGCAATACGAAGGAAACCTCGAAGCTTGGTTAAGTGCAGCACTTAGTAACCAAGATACATGTATTGAAGGGTTTGAAGGTACTGATAGACGCCTTGAGAGTTTCATCAGTGGAAGTTTAACACAAGTCACACAGCTTATCAGTAATGTTCTGTCTTTGTATACTCAACTTCATAGATTACCCTTTAGGTCTCCGAGGAACACTACATTGCTCGGAACAAGCGATGTAAGCTCGGAGTTTCCCGAATGGATGACCGATGCTGATCAAGAGCTCCTTAAGTCAAGACCGCACGGTGCGGTTGCAAATGCGATTGTTGCATTGGATGGGAGTGGTCATTACCGTACGATCAACGAAGCGGTTAATGCAGCTCCAAGTCATAGCAATAGGAGGTATGTTATCTATGTGAAGAAGGGACTTTACAAGGAGAATGTTGATATGAAGAAGAAGATGACCAACATTATGATCGTTGGTGATGGTATTGGCCAAACTATTATCACAAGCAACAGAAATTTCATGCAAGGATGGACCACTTTTAGAACTGCCACGTTTGCTGTATCTGGGAAGGGTTTCATTGCAAAGGACGTGACATTCCGGAACACTGCTGGACCAGTAAACCATCAAGCAGTGGCATTGCGGGTGGATTCAGACCAATCTGCATTCTTTAGGTGCAGTATAGAAGGAAACCAAGACACCCTTTACGCGCACTCGCTGCGACAATTCTACCGTGAATGTGAAATCTATGGAACAATAGACTTCATTTTTGGCAATGGAGCTGCTGTTCTACAAAACTGCAAGATATACACAAGAGTTCCACTTCCATTACAAAAAGTTACAATCACAGCACAAGGTAGAAAAAGTCCACATCAAAGCACAGGTTTTACAATTCAAGATAGTTATGTTTTGGCCTCACAACCTACATATTTAGGGAGGCCATGGAAGCAATATTCTAGAACAGTTTACATTAACACATATATGAGTGGAATGGTTCAACCTAGAGGGTGGCTTGAATGGCTTGGAAACTTTGCATTGGACACTTTGTGGTATGGTGAATATAGAAATTATGGACCTGGTTCATCCCTTGCTGGTAGAGTTAAATGGCCTGGTTTTCATATCATTAAAGATGCTTCTACTGCTGGTTACTTTACTGTTCAGAAATTCCTTAATGGTGGTTCATGGTTGCCAAAAACAGGTGTCAAGTTCACAGCAGGATTGACCAATTGA 1632 0.4173 MAMLVNCLFILILLPSFDKVLSFQDEIPSEIQTQDMQALIAQACMDIENQNSCLTNIQNELTKTGPPSPTSVISAALRTTINEAIGAINNMTKISTFSVNNREQLAIEDCKELIDFSVSELAWSLGEMRRIRAGDRNAQYEGNLEAWLSAALSNQDTCIEGFEGTDRRLESFISGSLTQVTQLISNVLSLYTQLHRLPFRSPRNTTLLGTSDVSSEFPEWMTDADQELLKSRPHGAVANAIVALDGSGHYRTINEAVNAAPSHSNRRYVIYVKKGLYKENVDMKKKMTNIMIVGDGIGQTIITSNRNFMQGWTTFRTATFAVSGKGFIAKDVTFRNTAGPVNHQAVALRVDSDQSAFFRCSIEGNQDTLYAHSLRQFYRECEIYGTIDFIFGNGAAVLQNCKIYTRVPLPLQKVTITAQGRKSPHQSTGFTIQDSYVLASQPTYLGRPWKQYSRTVYINTYMSGMVQPRGWLEWLGNFALDTLWYGEYRNYGPGSSLAGRVKWPGFHIIKDASTAGYFTVQKFLNGGSWLPKTGVKFTAGLTN 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02939 543 Gene3D - 236 541 IPR012334 -
Car03g02939 543 ProSitePatterns Pectinesterase signature 2. 383 392 IPR033131 -
Car03g02939 543 PANTHER PECTINESTERASE 6 541 - -
Car03g02939 543 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 22-RELATED 6 541 - -
Car03g02939 543 TIGRFAM PME_inhib: pectinesterase inhibitor domain 8 195 IPR006501 GO:0004857
Car03g02939 543 Pfam Plant invertase/pectin methylesterase inhibitor 39 190 IPR006501 GO:0004857
Car03g02939 543 SUPERFAMILY Pectin lyase-like 238 540 IPR011050 -
Car03g02939 543 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 39 195 IPR035513 -
Car03g02939 543 CDD PMEI-like_3 52 196 - -
Car03g02939 543 Pfam Pectinesterase 239 526 IPR000070 GO:0030599|GO:0042545
Car03g02939 543 Gene3D Invertase/pectin methylesterase inhibitor family protein 36 195 IPR035513 -
Car03g02939 543 SMART PMEI_2 35 190 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02939 Car-Chr3 74644746 74647047 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02939 3 543 Carbohydrate Esterase AT3G05620 61.957 0.0 706
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02939 K01051 - gmx:100810565 947.192