Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02925 ATGAAACACCGCAAATTACGTCCTCGATGGGGGTATTTCAGTAATTCGGAGCGTGTCATACCCAAAGGTCGCACGAAACTGTTCAAAGAAACGTTTTTTCTGCAATTTGGATCCTTTGTGCTTCGCTTTCTTCTTCCTCTTTCTCAGATGGTAAAGGGAGGAAAGGTTAGTAGCAAACGCAATTTAAGAAAAAGGGTTCGGTCAAAGGGGGGTGGTTCTGATGATTCTGATGAGGATTATGTGGTTTCGGATGATGCTGGGAATGTATCTGATTGTCCAGAGGACGAGTGTTTCTCTTTGGATGGATGTGCACCTGAGGATAGTTTTGATGATTTTATAGAAGACGAGGATGTGGAAGAAGAGGAGATTCAACGAGTGACGAAATTCAATAGATCGAAGGCCAAAAAGGGTGTAAGGTCTCAGCAGAAGAATGCAAGTAAAACCTCGCGGAAGAGAAGAAGGATTACATGTTCAGCACAGCTagaagaacaagaacaagaagaagaacaatatgaagaagatgatgatgatgatgaagaagaagaagaagaggacgacgacgacgatgaagaacaatacgaagaacaagatgaagaagaggacgaagaagaagaggaagaagaagaagaagaagagttagaagatgaagaagttgaagaagaagaggcagatggcaatgacaaggatgaggatttcaaatacgaagaagaggatttcaaatatgacgatgaagaatttgttccggaggaagaagattacacagacgaggaggaagaagaaacaaggggcagaaagaagaaaAGTAATGGCATGAAAGTTGGCAAGAAGCCTTTGCGGAAAAGGGTTTCTGTGACCAAAAGAAAAGGTCGAAAGAGGAGTGGTTCTAGAGTTTCAAAGAAGCCTGTGAGAAAGAGAAGACGAAAGAATGGAGGTTCAAGAGGGAAAGTACAGTGTGATGATGCAGATGATTTTTTAGATAATGGTCCAACCATCCGAACAAATTGCAGAAAGAAATCAGGCCAGAAAAGGAGAAGGATTCTCATTGAAGATGCCAATTCTGGTTCAGATTATGAGTCTAGACCATCTGATTATGAGTTTACTATCTCTGAAGAAGAAAAAGAACAGGTGAAAGAAGCCATGGAGTTGTGTGGGAATTTGAGAAGGAACTTGAGGAGAGCTTCTCTTCGAATGAAAAATGAAGTGGTTGGAGTACATGAAGAAGATCTACATGAGCAACGGAAGCCTTCAGGACGGAAGGGTAAGGAAAAGATAGAGGAATCAAAAGGAAAGAAGGGGAAGGAAAAAGTAGAGGACTCGAAAAGTGAGGTGGGAAAGCAGGTGTGTGGAATTTGTTTGTCTGAGGAAAATAAAAGAAGAGTAAGGGGAGTACTAAACAGTTGCACTCACTATTTTTGCTTTGCCTGTATTATGGAGTGGTCAAAGGTTGAATCTCGCTGCCCTTTGTGTAAGCAGAGATTCAAAACAATCAGTAAGCCTGCACGACCGACAACAGCAGTTGATTTGAGAGAAGTGGTGATACAAGTGCCCGAACGTGATCAGGTTTATCAGCCAACTGAAGAAGAACTCAGGAGCTATATTGATCCATACGAGGCGGTTATGTGTTCAGAGTGCCATCAAGGCGGAGATGATGGTCTCATGCTACTCTGTGATATATGTGATTCCCCTGCACATACATATTGTGTTGGTTTGGGGAGAGAAGTACCGGAAGGTAATTGGTACTGTGATGGTTGTAGACCAGTTGCTTTGGCATCTTCAAACTCCCAAGCTCAAGAATGTGTTGCTGAATTAACAGTTGGAACCCAAAGCCTGCCTTCTAGACCATCACCTGTTCATATACGAGAAAGTATAGACCTCAACTCAACGTCTTCACCTCATACATCTTTTAGTCAAGGGTTCGGGTTTGGATTCGGGAATCTTTCATCTTCTAGATTTTCTGGCAGAAGTGCCGAAGGAGCTTCTCCAATGTCTGGAGGCGGGGCACCGACTTTATCAGAGAGACGCTGGATACACCGACATATTCAGCAGCTACGTTCGATCGATAGAATGACTTCTACAACTGGCAGAATTAATGGTGTTCCAGCTACCGGTTCATTAAGCAACATGCATAGCTCTGAAATTGATCAAAGTAGGGAACCAACTTGTCAACATACAATGACACAGGACATAGGAACATCCTATCACACATTTTTTGAGGAGGGATTAAGCAACAACATTTCTCCATTAATGCAGAATGGAGATCCCTTCTCCGTAAGAGTAAATAATTCAGGAAGGCCCGTGGTTCAGGATTCAACTATGTTTTCCAACAGGGCTGTGAATGGGGTTATATGGCCTGGACTTTTGGAGACACGCACCTTAACAGATTATGAACCAATCCACCCGTTCAGCAGCAGATCTAACACTGTCAACGTGGCTAGTATGGCGGACCCTACTACCAAAGAAGAAAGTAACTTGCACATTGTAAAGGAGCAGTTGCAGTCAATGGTTAAAAGTCATCTGAAGAACCTGTCTCGAGACACTGAATTGGGTTATAGTACTTTCAAGGACATTGCAAGGAGTTCTACGCACACTATACTCGCCGCATGTGGTATCGAGCACAAGAAGAGTGAAGTTTGCATTGTGCCTCCACCACCCGTCTGTCCCCACATTGAATTAATAGCTGGTGGACAAACGAATCTCAACCACGTTTTTCTTATCGGCAAGACTAAAATTATTAAGGTTGGGAGATTTCGTTGGAGAAACAATTGTATCATGCTATCTCAAACAATGTTGTTGTAA 2796 0.3816 MKHRKLRPRWGYFSNSERVIPKGRTKLFKETFFLQFGSFVLRFLLPLSQMVKGGKVSSKRNLRKRVRSKGGGSDDSDEDYVVSDDAGNVSDCPEDECFSLDGCAPEDSFDDFIEDEDVEEEEIQRVTKFNRSKAKKGVRSQQKNASKTSRKRRRITCSAQLEEQEQEEEQYEEDDDDDEEEEEEDDDDDEEQYEEQDEEEDEEEEEEEEEEELEDEEVEEEEADGNDKDEDFKYEEEDFKYDDEEFVPEEEDYTDEEEEETRGRKKKSNGMKVGKKPLRKRVSVTKRKGRKRSGSRVSKKPVRKRRRKNGGSRGKVQCDDADDFLDNGPTIRTNCRKKSGQKRRRILIEDANSGSDYESRPSDYEFTISEEEKEQVKEAMELCGNLRRNLRRASLRMKNEVVGVHEEDLHEQRKPSGRKGKEKIEESKGKKGKEKVEDSKSEVGKQVCGICLSEENKRRVRGVLNSCTHYFCFACIMEWSKVESRCPLCKQRFKTISKPARPTTAVDLREVVIQVPERDQVYQPTEEELRSYIDPYEAVMCSECHQGGDDGLMLLCDICDSPAHTYCVGLGREVPEGNWYCDGCRPVALASSNSQAQECVAELTVGTQSLPSRPSPVHIRESIDLNSTSSPHTSFSQGFGFGFGNLSSSRFSGRSAEGASPMSGGGAPTLSERRWIHRHIQQLRSIDRMTSTTGRINGVPATGSLSNMHSSEIDQSREPTCQHTMTQDIGTSYHTFFEEGLSNNISPLMQNGDPFSVRVNNSGRPVVQDSTMFSNRAVNGVIWPGLLETRTLTDYEPIHPFSSRSNTVNVASMADPTTKEESNLHIVKEQLQSMVKSHLKNLSRDTELGYSTFKDIARSSTHTILAACGIEHKKSEVCIVPPPPVCPHIELIAGGQTNLNHVFLIGKTKIIKVGRFRWRNNCIMLSQTMLL 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02925 931 Coils Coil 154 226 - -
Car03g02925 931 ProSiteProfiles Zinc finger PHD-type profile. 538 587 IPR019787 -
Car03g02925 931 Pfam PHD-finger 540 586 IPR019787 -
Car03g02925 931 PANTHER F18C1.6 PROTEIN 186 895 - -
Car03g02925 931 PANTHER F18C1.6 PROTEIN 50 184 - -
Car03g02925 931 SUPERFAMILY RING/U-box 447 496 - -
Car03g02925 931 SMART ring_2 448 489 IPR001841 -
Car03g02925 931 Coils Coil 369 396 - -
Car03g02925 931 MobiDBLite consensus disorder prediction 118 362 - -
Car03g02925 931 PANTHER F18C1.6 PROTEIN 186 895 - -
Car03g02925 931 PANTHER F18C1.6 PROTEIN 50 184 - -
Car03g02925 931 SUPERFAMILY FYVE/PHD zinc finger 510 586 IPR011011 -
Car03g02925 931 MobiDBLite consensus disorder prediction 312 326 - -
Car03g02925 931 MobiDBLite consensus disorder prediction 56 88 - -
Car03g02925 931 MobiDBLite consensus disorder prediction 406 438 - -
Car03g02925 931 Pfam Ring finger domain 447 490 IPR001841 -
Car03g02925 931 ProSitePatterns Zinc finger RING-type signature. 467 476 IPR017907 -
Car03g02925 931 ProSiteProfiles Zinc finger RING-type profile. 448 490 IPR001841 -
Car03g02925 931 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 418 499 IPR013083 -
Car03g02925 931 MobiDBLite consensus disorder prediction 162 257 - -
Car03g02925 931 CDD RING-HC_Topors 448 490 - -
Car03g02925 931 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 501 591 IPR013083 -
Car03g02925 931 SMART PHD_3 540 585 IPR001965 -
Car03g02925 931 MobiDBLite consensus disorder prediction 130 154 - -
Car03g02925 931 MobiDBLite consensus disorder prediction 268 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02925 Car-Chr3 74520306 74524498 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02925 448 493 C3H Transcription Factor Family AT2G39100 45.652 1.59e-08 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Car03g02925 PHD 7.1e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02925 - - mtr:MTR_7g112410 892.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02925 03 74520306 74524498 Car03g02925 03 74520306 74524498 ECH