Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02923 ATGTCGTATCGACCAACCGCAAACGCGAGGACCGATGTCCGTCGCAATCGGTACAAAGTGGCCGTTGATGCCGAAGAAGGTCGCAGACGGAGAGAGGATACTATGGTTGAGATCCGAAAGAACCGTAGGGAAGAGAGCTTGCAGAAGAAGAGACGCGAGGGACTTGCTCAGCAGATGCCTGCATCAGCTCAATCTACGCTAATAGAGAAAAAGTTGGAACACCTACCATCCTTGGTTACAGGTATTTGGACTGATGATAATAACATGCAGTTCGAGGCAACTACTCAGTTTCGGAAGCTGCTTTCAATCGAACGTAGCCCACCAATTGAGGAGGTTATACAAGCTGGTGTCGTTCCTCGCTTTGTTGAGTTTTTGATGAGGGAAGATTTCCCACAGCTGCAGTTTGAGGCTGCTTGGGCTTTGACAAATATAGCTTCTGGAACATCTGAAAACACTAAGGTAGTAATTGATCACGGTGCTGTCCCAATTTTTGTCCAGCTCCTTGCTTCTCCTAGCGATGATGTCCGTGAACAGGCTGTGTGGGCATTAGGAAATGTTGCTGGAGATTCACCTAGGTGCCGTGATCTTGTTCTCAGTCATGGAGCTTTGCTTCCTCTGTTGGCACAATTGAATGAGCACGCCAAACTTTCTATGCTCAGAAACGCTACTTGGACACTTTCAAACTTCTGCAGGGGGAAGCCACAGCCTGCTTTTGAACAGGTTAAACCTGCACTTCCTGCACTTGCCAGTCTCATCCATTCAAATGACGAAGAAGTCTTAACTGATGCTTGTTGGGCACTTTCATATCTTTCTGATGGTACTAATGACAAAATTCAAGGCGTAATTGATGCTGGTGTCTGTAGCCGGCTTGTTGAGCTTCTACTGCACCCATCTCCTTCTGTTCTTATTCCTGCTCTTCGAACAGTTGGAAATATTGTCACAGGAGACGACATGCAGACACAGGTTATCATCAACCATCAAGTTCTTCCCAGTCTTCTGAATCTCTTGACTAATAATTATAAAAAAAGCATCAAGAAGGAAGCATGTTGGACAATATCGAACATCACAGCTGGGAATAAACAACAGATTCAGGCTGTGATTGATGCTAATATATTTGGTCCTTTGGTCCACTTGCTTCAAAATGCTGAGTTTGATATCAAGAAGGAAGCTGCCTGGGCCATCTCAAATGCTACATCGGGTGGTTCTCATGAACAATTAAAATACCTGGTAAGTCAAGGGTGTATTAAGCCCTTGTGTGATCTTCTCATATGTCCTGATCCTAGGATTGTGACAGTTTGTCTGGAAGGGCTGGAAAACATTTTGAAGGTAGGTGAAGCTGATAAAAATGTTAGCAACACTGATGGTGTGAATCTGTATGCCCAAATGATTGATGATGCTGAGGGGTTGGAGAAAATTGAGAACCTCCAGAGTCATGACAACACTGAGATTTATGAAAAGGCGGGTTCAACTTTGGTGGCTCTGAAGTTCCTTCTGTGCCCACTGGTGGATTCAACTTCAACTAGAAGGATTTTTGGCTGTTCTATCTGTGAAATCCTCCGGTGTGACAGTTCAACGGTGGGGGAAGTCAGCGTTGTTTCATTATCCTTAGGTTCTATAAGGTTCAGCTTTGATAGATTGGAGTCAGCAAGTACCACTTATGATTCTGAGTATTTTGGCAAATATTACATGATGACACTATTCTTTCTTCATTTTAGTTGGGCAAGGAACTGCGGAGTTTTTCTTTTACCCTGTCCCATTGTTTCGTTGAAGTTTACCCTAAAGTTTCAATGTGTTACAAATCTGGCAATTACCGACATGAAAAGGATGATTCATTCGGATCGATATGAGAGTCCCCAACTGCATTGCATTGCCAGAACCCATGTTCTATATTGGAAAGAGGTTGACCTCCTTGCTTTTGTCATGTTACAATCCTTTTGCCGCCTTTCTCCTCGGTCCACAACAACAAAATGTAGGACTGGTGCCAACATTATTTTTCGGGACGGGGTAGAGATTCTCGAACGAGAAAAAGGATCCAATGACTTGGAAAGAATTGAACGAGGAGCCGTATGCGGTGAAAATCTCATGTACGGTTCTGTAGAGTGGCAAAAAAAAAAAACCGCAAAATCCGATCCAATTTATCGTAATCGATTAGTTAACATATTGGTTAACCGGATTATGAAACACGGAAAAAAATCATTGGCTTATCAAATTATCTATCGAGCTATGAAAAGGATTCAACAAAAGATAGAAACAAATCCACTATCTGTTTTACGTCAAGCAATACGTAGAGTAACTCCCGATATAGCAGTAAAAGCAAGACGCGTAAGCGGATCTACTCATCAAGTTCCGACTGAAATAGGATCCACACAAGGAAAAGCACTTGCTATTCGTTGGTTATTAGGGGCAGCCCGAAAACGTCCGGGTCGAAATATGGCTTTCAAATTAAGTTCTGAATTAGTGGATGTTGCCAAAGGAAGTGGCGATGCCGAATGTTGTTCATATAAGGAAATGAGTGTGATCAAGAAGTGTTGTTCTGATTGCAAAACCACCAAAACTCCACTTTGGAGAGGAGGACCAAATGGCCCCAAGACGTTGTGCAACGCTTGCGGAATTAGGTACAGGAAAAGAAGGGGTTGTTGTAATAAGAAAGGACAAGAAAAGGAAAGGAAGAGAGAGAGAGCAGAAAATGGTGTTGGTGGTAACGATGATTTGAGAGTGTGTTTGAAAATGAAGTTAGTGGCGTTGGGTGAAGAGGTTTTGTTGAATTCGGTTATGAAGAAACAAAGGATGATCAAATTAGGGGAAGAGGAACAGGCTGCTGTGTGTTTGATGGCAATTTCCTGTGGCTTTGTTTTTGCTTGA 2862 0.4298 MSYRPTANARTDVRRNRYKVAVDAEEGRRRREDTMVEIRKNRREESLQKKRREGLAQQMPASAQSTLIEKKLEHLPSLVTGIWTDDNNMQFEATTQFRKLLSIERSPPIEEVIQAGVVPRFVEFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVQLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSHGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPAFEQVKPALPALASLIHSNDEEVLTDACWALSYLSDGTNDKIQGVIDAGVCSRLVELLLHPSPSVLIPALRTVGNIVTGDDMQTQVIINHQVLPSLLNLLTNNYKKSIKKEACWTISNITAGNKQQIQAVIDANIFGPLVHLLQNAEFDIKKEAAWAISNATSGGSHEQLKYLVSQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEADKNVSNTDGVNLYAQMIDDAEGLEKIENLQSHDNTEIYEKAGSTLVALKFLLCPLVDSTSTRRIFGCSICEILRCDSSTVGEVSVVSLSLGSIRFSFDRLESASTTYDSEYFGKYYMMTLFFLHFSWARNCGVFLLPCPIVSLKFTLKFQCVTNLAITDMKRMIHSDRYESPQLHCIARTHVLYWKEVDLLAFVMLQSFCRLSPRSTTTKCRTGANIIFRDGVEILEREKGSNDLERIERGAVCGENLMYGSVEWQKKKTAKSDPIYRNRLVNILVNRIMKHGKKSLAYQIIYRAMKRIQQKIETNPLSVLRQAIRRVTPDIAVKARRVSGSTHQVPTEIGSTQGKALAIRWLLGAARKRPGRNMAFKLSSELVDVAKGSGDAECCSYKEMSVIKKCCSDCKTTKTPLWRGGPNGPKTLCNACGIRYRKRRGCCNKKGQEKERKRERAENGVGGNDDLRVCLKMKLVALGEEVLLNSVMKKQRMIKLGEEEQAAVCLMAISCGFVFA 953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02923 953 Gene3D - 13 52 IPR036975 GO:0006606
Car03g02923 953 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 243 285 IPR000225 GO:0005515
Car03g02923 953 SUPERFAMILY Ribosomal protein S7 701 830 IPR036823 -
Car03g02923 953 Pfam Atypical Arm repeat 457 487 IPR032413 -
Car03g02923 953 MobiDBLite consensus disorder prediction 40 62 - -
Car03g02923 953 ProSitePatterns Ribosomal protein S7 signature. 715 741 IPR020606 GO:0003723|GO:0003735|GO:0006412
Car03g02923 953 PANTHER IMPORTIN ALPHA 2 490 - -
Car03g02923 953 SUPERFAMILY ARM repeat 15 490 IPR016024 -
Car03g02923 953 Gene3D Ribosomal protein S7 domain 699 842 IPR036823 -
Car03g02923 953 Pfam Importin beta binding domain 14 95 IPR002652 GO:0006606|GO:0061608
Car03g02923 953 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 159 201 IPR000225 GO:0005515
Car03g02923 953 ProSiteProfiles IBB domain profile. 1 60 IPR002652 GO:0006606|GO:0061608
Car03g02923 953 Gene3D - 843 897 IPR013088 GO:0006355|GO:0008270
Car03g02923 953 Pfam GATA zinc finger 844 877 IPR000679 GO:0006355|GO:0043565
Car03g02923 953 CDD ZnF_GATA 844 893 IPR000679 GO:0006355|GO:0043565
Car03g02923 953 ProSiteProfiles GATA-type zinc finger domain profile. 844 874 IPR000679 GO:0006355|GO:0043565
Car03g02923 953 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 841 881 - -
Car03g02923 953 CDD uS7_Chloroplast 704 829 - -
Car03g02923 953 ProSitePatterns GATA-type zinc finger domain. 844 869 IPR000679 GO:0006355|GO:0043565
Car03g02923 953 Pfam Armadillo/beta-catenin-like repeat 190 231 IPR000225 GO:0005515
Car03g02923 953 Pfam Armadillo/beta-catenin-like repeat 148 187 IPR000225 GO:0005515
Car03g02923 953 Pfam Armadillo/beta-catenin-like repeat 403 440 IPR000225 GO:0005515
Car03g02923 953 Pfam Armadillo/beta-catenin-like repeat 244 271 IPR000225 GO:0005515
Car03g02923 953 Pfam Armadillo/beta-catenin-like repeat 277 313 IPR000225 GO:0005515
Car03g02923 953 Pfam Armadillo/beta-catenin-like repeat 106 146 IPR000225 GO:0005515
Car03g02923 953 Pfam Armadillo/beta-catenin-like repeat 359 398 IPR000225 GO:0005515
Car03g02923 953 Pfam Armadillo/beta-catenin-like repeat 317 357 IPR000225 GO:0005515
Car03g02923 953 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 116 159 IPR000225 GO:0005515
Car03g02923 953 SMART GATA_3 838 890 IPR000679 GO:0006355|GO:0043565
Car03g02923 953 Pfam Ribosomal protein S7p/S5e 703 829 IPR023798 -
Car03g02923 953 SMART arm_5 148 188 IPR000225 GO:0005515
Car03g02923 953 SMART arm_5 233 272 IPR000225 GO:0005515
Car03g02923 953 SMART arm_5 189 231 IPR000225 GO:0005515
Car03g02923 953 SMART arm_5 274 314 IPR000225 GO:0005515
Car03g02923 953 SMART arm_5 359 399 IPR000225 GO:0005515
Car03g02923 953 SMART arm_5 316 357 IPR000225 GO:0005515
Car03g02923 953 SMART arm_5 402 442 IPR000225 GO:0005515
Car03g02923 953 SMART arm_5 105 146 IPR000225 GO:0005515
Car03g02923 953 PANTHER IMPORTIN SUBUNIT ALPHA 2 490 - -
Car03g02923 953 TIGRFAM rpsG_bact: ribosomal protein uS7 703 829 IPR005717 GO:0003735|GO:0006412|GO:0015935
Car03g02923 953 Gene3D - 73 492 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02923 Car-Chr3 74492532 74502160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02923 841 953 C2C2-Gata Transcription Factor Family AT5G49300 54.867 1.77e-28 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Car03g02923 Ribosomal_S7 1.9e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02923 K15042 - gmx:100798125 903.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g00526 07 4654377 4655498 Car03g02923 03 74492532 74502160 ECH
Car03g02923 03 74492532 74502160 Car03g02923 03 74492532 74502160 ECH