Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02880 ATGGGAAGACACTCTTGTTGTTACAAGCAGAAGCTTCGTAAAGGTCTATGGTCCCCAGAAGAAGATGAAAAGCTCTTGAATTATATCACCAAACATGGTCATGGATGTTGGAGTTCTGTTCCAAAATTAGCTGGTTTGCAGAGGTGTGGGAAGAGTTGTAGATTGAGGTGGATAAATTACCTTAGACCTGATTTGAAAAGAGGAGCATTCTCACAACAAGAAGAGAATTCAATAATTGAACTTCATGCAGTCCTTGGGAACAGGTGGTCACAGATTGCAGCTCAGTTACCAGGAAGAACCGACAATGAGATAAAGAATCTATGGAATTCAAGTCTTAAAAAGAAGCTAAGGCAAAATGGAATAGACCCAAATACACACCAACCACTCTCTCAACTTGAAGTTGAGAACAAAGACAAGGATAACAAGCCATCTTCATCTGACAAAAGCAATAATCTTTTTCTCTCAAATTCTATTACTATGGATCCTAATTATCCACTTGAAATTTCTTCCACTTCAAAAATCAACAACAATAGAAGCACCAACCAAGAATTGTTCTTAGATCACAATTTGGTTGGATTAGGAGGATGTTTCTCTTTTCACCAACTCAATTATGGAATTAACAACATGGAACTATCTCCAAATTCCAACAACAATTCACTTTGTTTCATACCAGGTAGTAGTAGTAGTTCTCAAATGATGTCAGAACTCAATTCTTCCACCATGCTTCATTCTGTTTTCCAAACTCCAAACACAAAACATGTTGATGGGATTCAGCAACAACAACAAAATAATAATTACTATGATCATGCTCATCAAGTTGAAGACATAAAATGGTGTGAATATCTAAATGCACCATTTTTTGTTGGAAACAACACAGTGCAGCATCAAACTACAGCAACATACAGTGATAATATTATGAATAATGATGTTAAACAAGAAACAGGATTCATAACCGATGAATCAAGTAGTAATACTAATACATGGCAACATCATAATCAACATTTTCAATTATCTGCTTCATCAGATATATATAGCAAAGATCTTCTTCAGAGATTTTCACTGGCTTTTGGACAAACACTTTAA 1083 0.3536 MGRHSCCYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQQEENSIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSSLKKKLRQNGIDPNTHQPLSQLEVENKDKDNKPSSSDKSNNLFLSNSITMDPNYPLEISSTSKINNNRSTNQELFLDHNLVGLGGCFSFHQLNYGINNMELSPNSNNNSLCFIPGSSSSSQMMSELNSSTMLHSVFQTPNTKHVDGIQQQQQNNNYYDHAHQVEDIKWCEYLNAPFFVGNNTVQHQTTATYSDNIMNNDVKQETGFITDESSSNTNTWQHHNQHFQLSASSDIYSKDLLQRFSLAFGQTL 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02880 360 CDD SANT 69 112 IPR001005 -
Car03g02880 360 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Car03g02880 360 CDD SANT 17 61 IPR001005 -
Car03g02880 360 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Car03g02880 360 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Car03g02880 360 Gene3D - 11 67 - -
Car03g02880 360 MobiDBLite consensus disorder prediction 118 156 - -
Car03g02880 360 PANTHER MYB DOMAIN PROTEIN 55 1 250 - -
Car03g02880 360 PANTHER MYB DOMAIN PROTEIN 55 264 352 - -
Car03g02880 360 PANTHER HOMEODOMAIN-RELATED 264 352 - -
Car03g02880 360 PANTHER HOMEODOMAIN-RELATED 1 250 - -
Car03g02880 360 Gene3D - 68 148 - -
Car03g02880 360 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Car03g02880 360 SMART sant 66 114 IPR001005 -
Car03g02880 360 SMART sant 13 63 IPR001005 -
Car03g02880 360 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Car03g02880 360 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Car03g02880 360 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02880 Car-Chr3 74122519 74124114 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02880 1 360 MYB Transcription Factor Family AT1G09540 47.500 2.32e-105 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car03g02880 Myb_DNA-binding 2.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02880 K09422 - gmx:778072 369.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g00645 04 6383229 6385315 Car03g02880 03 74122519 74124114 ECH
Car03g02880 03 74122519 74124114 Car03g02880 03 74122519 74124114 ECH
Car03g02880 03 74122519 74124114 Car04g00645 04 6383229 6385315 PCT