Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02876 ATGTCCTCGTCAAGACCTAGCCAATCAGTCAGCAATAATTCAGGTAGATTAAGACACAGTGCTGGGACTATTCCTCAGACCACTGCAGATGCAAAACTCCATGCAACTTTTGAGGAGTCTGGTAGTTCCTTTGACTACTCCAATTCAATGCGATTTTCTCATGGTACAAACACAGCTACTGCAGACCACCAACCAAGTTCTGACAGAGTAACAACAGCTTACCTCCATCAGATACAGAAAGAGAAGCTGATTCAGTCTTTTGGTTGTTTGCTAGCATTAGATCCGAAAACATGTAAGGTCATTGCATACAGTGAGAATGCACCTGAAATGCTGGGTATGGCAGGTGTTGATGGCCACCCTTCCCTTGGCATTGACACTGACATAAGATCTATTTTCACTGACCCAAGTGCTTCTTCATTTCGGAAGGCACTAGGATGTGTGGATGTTTCATTTCTTAATCCCATACTAGTCCATTGCAAGACCTCAAGGAAGTCCTTCTACGCAATTATCCATTGTGTGAATGGTAGTTTGATCGTTGATTTTGAGCCAATCGGGCCTCATGAAGTTACCATGACTGCAGCAGGTGCCTTGCAATCTTACAAGCTTGCAGCAAAATCGATAACTCGGCTTCAATCTTTGCCTAGTGGAAGCATGGAAGCACTATGTGATGCAATGGTTCAAGAAGTTTTTGAACTCACAGGTTATGATAGAGTGATGGCTTATAAATTTCATGAAGATGATCACGGAGAAGTGGTTGCTGAGGTCACAAAGCCAGGCCTAGAGCCATATCTTGGTTTGCACTATCCAGCCACTGATATTCCTCAGGCTACACGCTTTTCGTTCATGAGGAACAAGGTCCGAATGATAGTTGATTGTCGCGCAAGGCATGTGAAGGTGCTTCAAGAAAAAAATAATCTATTTGATTTAAATTTGTGTACATCAACCTTAAGGGCTCCTCACAGTTGCCATTTGCAATACATGGAGAACATGAATACTAGTGCTTCCTTGGTTATGGCAGTTGTAATCAATGACAGCAATGAAGATGAGGATGGCTCTGATGATGTTCATCCTCAGAAGAGAAAGAGACTATGGGGTTTAATTGTTTCCCATCACATTACTCCCAGGTTTGTTCCCTTCCCTATTAGGTATGCTTGTGAGTTTATAGCTCAAGTATTTGCCATCCACGTGAACAAAGAGATAGAGTTGGAATATCAGATTATTGAGAAGAACATTCTACGCACTCAAACACTCTTGTGTGATTTGCTGATGCGTGATGCGCCCATAGGTATTGTGTCAAAGAGTCCTAATATAATGGACCTTGTGAAATGTGATGGAGCAGCCCTCTTGTATAAGAACAAGGTATGGAGATTAGGCGTGACACCAAGTGAATCACAGATACGCGATATTGCTTTATGGATCTCTGAGTGCCATATGGATTCGACCGGTTTGAGTACAGATAGCTTGTCTGATGCAGGGTTTCCAGGGGCTGCTAAACTTGGTGATACTGTTTGTGGAGTGGCAGCTGTAAGAATAGTTTCCAAAGATATAGTTTTCTGGTTTCGGTCACACACTGCTGTTGATATCCGATGGGGTGGTGCAAAGGATGAACCTAGTGAAAGAGGTGATGGTAGGAGGATGCATCCAAGAGCATCATTTGAGACTTTCCTTGAAGTTGTGAAGACAAGGAGTTTACCATGGAAGGACTATGAAATGGATGCTATTCATTCATTACAGCTAATACTGAGAAATGCATTCAAAAATACAGACTGTATGGATATAAGCACAAATGCTATCAATACAAGACTAAGTGATTTGAATATTGAGGGGATGCAAGAACTGGAGGCAGTGACAAGTGAGATGGTTAGGTTAGTTGAAACAGCAACTGTGCCAATTTTGGCAGTTGATGTAGATGGTGTTGTCAATGGATGGAATAAAAAGATTTCTGAATTGACAGGTCTTCCAGTTGAGGAGGCTATTGGGAAGCATTTACTTGCGCTTGTTGAGGACTTTTCAATAGACAGAGTCAAGAAGATGTTGGACATGGCATTGCAGGGTGAAGAAGAGAAGAATGTCCAATTTGAGCTCAAAACATATAATTTGAAGATTGATTCTGATCCTATATGCTTGGTAGTTAATGCTTGTACAAGCAGAGATGTTCATGATAATGTGGTGGGGGTTTGTTTTATGGCTCAGGATATAACTGGTCAGAAGGCAGTCATGGACAAATTCACTCGAATTGAAGGTGATTACAAGGCAATTGTACAGAATCCAAATCCATTGATGCCACCAATATTTGGCACAGATGAATTTGGCTGGTGTTGTGAGTGGAATTCAGCTATGACAAAATTAACCGGGTGGAAACGAGACGAAGTAATGAATAAAATGCTTTTAGGGGAAGTTTTTGGCACCAAAACAGCTTCTTGTTGCCGTCTAAAGAATCATGAAGCCGCGGTTAATTTTAGCATTGTACTTCATAAAACCATGACAGGTTTGGAAAATGAGAAGGTTGCTTTCGGTTTCTTTACTCGAAATGGAATGTATGTAGAATGCATACTTTCCGTGAGTTCAAAATTGGACATAGAAGGTGTAGTTACTGGCGGTGTCTTCTGCTTCTTGCAGCTAGCTAGTCCAGAGCTGCAACAAGCATTACATATTCAGCACATCTCTGAACAAAATGCCTCAAAGAGACTAAAAGCTTTAACTTATATGAAAAGGCAAATCCGAAATCCGTTACGTGGGATTGTGTTCTCAAGGAAATTGTTAGAGGATACTGAGCTGGGAACTGATCAAAAACAAATTTTGCATACTGGTACTCGGTGCGAACGCCAGCTTAGCAAAGTTCTAGATGACTCAGATCTTGACAGTATAATTGATGGCTACTTAGATTTGGAAATGGTTAAATTCACTCTGCATGAAGTTTTGGGTGCATCCCTAAGTCAAGTCATGGCAAGGAGTAAAAATGCAAAGGGTATCCAAGTAGTCTATGATGTTGCTGAGCAGATTATGGCAGAAACCTTATATGGTGATAGTCTTAGGCTTCAGCAGGTCTTAGCTGACTTTTTATTGATTTCCTTGAATTTTACCCCAACTGGAGGTCAGGTTGTTGTAGCTGCATTTTTGACCAAACATCAATTGGGGAAATTAGTCCATCTAGCTAATTTGGAGCTCAGAATAACACATGATGGTTTAGGGGTACCAGAAGCGTTGCTGAACCAGATGTTTGGAGTTGATAGACAAGAATCCGAGGAGGGTATTAGCCTGCTCATCAGCAGAAAGCTACTAAAGCTTATGAATGGAGACGTGCTTTATGTTAGGGAAGAAGGAAAATCATCTTTCATCATATCTCTTGAACTTGCCTTGGCCCAATAA 3369 0.4129 MSSSRPSQSVSNNSGRLRHSAGTIPQTTADAKLHATFEESGSSFDYSNSMRFSHGTNTATADHQPSSDRVTTAYLHQIQKEKLIQSFGCLLALDPKTCKVIAYSENAPEMLGMAGVDGHPSLGIDTDIRSIFTDPSASSFRKALGCVDVSFLNPILVHCKTSRKSFYAIIHCVNGSLIVDFEPIGPHEVTMTAAGALQSYKLAAKSITRLQSLPSGSMEALCDAMVQEVFELTGYDRVMAYKFHEDDHGEVVAEVTKPGLEPYLGLHYPATDIPQATRFSFMRNKVRMIVDCRARHVKVLQEKNNLFDLNLCTSTLRAPHSCHLQYMENMNTSASLVMAVVINDSNEDEDGSDDVHPQKRKRLWGLIVSHHITPRFVPFPIRYACEFIAQVFAIHVNKEIELEYQIIEKNILRTQTLLCDLLMRDAPIGIVSKSPNIMDLVKCDGAALLYKNKVWRLGVTPSESQIRDIALWISECHMDSTGLSTDSLSDAGFPGAAKLGDTVCGVAAVRIVSKDIVFWFRSHTAVDIRWGGAKDEPSERGDGRRMHPRASFETFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKNTDCMDISTNAINTRLSDLNIEGMQELEAVTSEMVRLVETATVPILAVDVDGVVNGWNKKISELTGLPVEEAIGKHLLALVEDFSIDRVKKMLDMALQGEEEKNVQFELKTYNLKIDSDPICLVVNACTSRDVHDNVVGVCFMAQDITGQKAVMDKFTRIEGDYKAIVQNPNPLMPPIFGTDEFGWCCEWNSAMTKLTGWKRDEVMNKMLLGEVFGTKTASCCRLKNHEAAVNFSIVLHKTMTGLENEKVAFGFFTRNGMYVECILSVSSKLDIEGVVTGGVFCFLQLASPELQQALHIQHISEQNASKRLKALTYMKRQIRNPLRGIVFSRKLLEDTELGTDQKQILHTGTRCERQLSKVLDDSDLDSIIDGYLDLEMVKFTLHEVLGASLSQVMARSKNAKGIQVVYDVAEQIMAETLYGDSLRLQQVLADFLLISLNFTPTGGQVVVAAFLTKHQLGKLVHLANLELRITHDGLGVPEALLNQMFGVDRQESEEGISLLISRKLLKLMNGDVLYVREEGKSSFIISLELALAQ 1122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02876 1122 Gene3D PAS domain 77 320 - -
Car03g02876 1122 Pfam Phytochrome region 413 587 IPR013515 GO:0006355|GO:0009584
Car03g02876 1122 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 217 390 IPR016132 -
Car03g02876 1122 SMART HKATPase_4 1008 1120 IPR003594 -
Car03g02876 1122 Pfam PAS fold 73 183 IPR013654 GO:0006355
Car03g02876 1122 SUPERFAMILY GAF domain-like 197 397 - -
Car03g02876 1122 Gene3D - 198 561 IPR029016 -
Car03g02876 1122 Gene3D PAS domain 610 748 - -
Car03g02876 1122 SUPERFAMILY GAF domain-like 408 585 - -
Car03g02876 1122 TIGRFAM sensory_box: PAS domain S-box protein 623 737 IPR000014 -
Car03g02876 1122 MobiDBLite consensus disorder prediction 1 26 - -
Car03g02876 1122 CDD PAS 763 797 IPR000014 -
Car03g02876 1122 ProSiteProfiles PAS repeat profile. 749 801 IPR000014 -
Car03g02876 1122 ProSiteProfiles PAS repeat profile. 616 686 IPR000014 -
Car03g02876 1122 Pfam GAF domain 218 400 IPR003018 GO:0005515
Car03g02876 1122 Pfam PAS fold 749 873 IPR013767 GO:0006355
Car03g02876 1122 Pfam PAS fold 619 733 IPR013767 GO:0006355
Car03g02876 1122 Gene3D - 964 1121 IPR036890 -
Car03g02876 1122 PANTHER TWO-COMPONENT HISTIDINE KINASE 1 1120 - -
Car03g02876 1122 PANTHER PHYTOCHROME A 1 1120 - -
Car03g02876 1122 Gene3D - 405 578 IPR043150 -
Car03g02876 1122 SMART gaf_1 217 410 IPR003018 GO:0005515
Car03g02876 1122 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1008 1118 IPR003594 -
Car03g02876 1122 SUPERFAMILY PYP-like sensor domain (PAS domain) 622 728 IPR035965 -
Car03g02876 1122 SUPERFAMILY PYP-like sensor domain (PAS domain) 78 186 IPR035965 -
Car03g02876 1122 SMART HisKA_10 895 956 IPR003661 GO:0000155|GO:0007165
Car03g02876 1122 SMART pas_2 618 684 IPR000014 -
Car03g02876 1122 SMART pas_2 748 819 IPR000014 -
Car03g02876 1122 CDD PAS 627 733 IPR000014 -
Car03g02876 1122 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 957 1116 IPR036890 -
Car03g02876 1122 SUPERFAMILY PYP-like sensor domain (PAS domain) 763 870 IPR035965 -
Car03g02876 1122 CDD HATPase_Phy-like 1007 1118 IPR044767 -
Car03g02876 1122 PRINTS Phytochrome signature 132 154 IPR001294 GO:0006355|GO:0009584
Car03g02876 1122 PRINTS Phytochrome signature 232 251 IPR001294 GO:0006355|GO:0009584
Car03g02876 1122 PRINTS Phytochrome signature 317 338 IPR001294 GO:0006355|GO:0009584
Car03g02876 1122 PRINTS Phytochrome signature 430 450 IPR001294 GO:0006355|GO:0009584
Car03g02876 1122 PRINTS Phytochrome signature 515 534 IPR001294 GO:0006355|GO:0009584
Car03g02876 1122 PRINTS Phytochrome signature 548 566 IPR001294 GO:0006355|GO:0009584
Car03g02876 1122 PRINTS Phytochrome signature 619 635 IPR001294 GO:0006355|GO:0009584
Car03g02876 1122 PRINTS Phytochrome signature 638 653 IPR001294 GO:0006355|GO:0009584
Car03g02876 1122 PRINTS Phytochrome signature 711 728 IPR001294 GO:0006355|GO:0009584
Car03g02876 1122 PRINTS Phytochrome signature 731 751 IPR001294 GO:0006355|GO:0009584
Car03g02876 1122 PIRSF Phytochrome_conventional 1 1122 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Car03g02876 1122 ProSitePatterns Phytochrome chromophore attachment site signature. 317 326 IPR013516 -
Car03g02876 1122 ProSiteProfiles Histidine kinase domain profile. 902 1120 IPR005467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02876 Car-Chr3 74086833 74093349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02876 1 1121 Histidine Kinase Gene Family AT1G09570 71.517 0.0 1667
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02876 K12120 - gmx:100791098 1715.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02876 03 74086833 74093349 Car03g02876 03 74086833 74093349 ECH
Car03g02876 03 74086833 74093349 Car04g00653 04 6466585 6473044 PCT