Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02873 ATGGCTTCCGTAACATTAATTGGTGCTTCCTCCACATACAAGCTTCCTCCTCTCGAACAATTCAAAAAGCACAAACCAACTTCATCCGTTAGATTCCATTCTTTCGACGGCAACAAGTCCCGCCACGTCAGCAACAACCTCCTCACACATAACAACTCCTCTGATAGGTTTCTTCCTTCCGCGGTTGCTACTCCCAACTCCTCATCTTCTTCACTCCTCAGTGATGACGCATTCCAAGGAATAGGCTTCGACGAAGACGATGAGTTCCCTTCCCAAACTGTTTCTGCCGACGAACTTGACATTTCCAAACTCAACTTGCCTTCGCGTCTCGTCGATTCACTCCGCAACCGTGGTATTACCGAACTTTTTCCCATTCAGAGAGCCGTGTTAGTACCTGCACTACAAGGTAGAGATATAATCGCTCGTGCTAAGACTGGGACAGGGAAAACATTGGCGTTTGGAATTCCTATTATTAATGGCCTCAATGATGATGGTGATTCAGGTTCTTACAGGCGTCTTCCTAGAGCTTTGGTCCTTGCACCGACAAGGGAGTTAGCAAAGCAAGTAGAGAAAGAGATAAAAGAATCTGCACCTTATCTCAAAACGGTTTGTGTTTATGGAGGTGTTTCTTATGTTACTCAGCAGAGTGCACTTTCGCGTGGTGTTGATGTAGTTGTTGGAACTCCCGGTAGACTGATTGACCTTATAAATGGGAACACGCTTAAGTTGAGTGAAGTTGAGTATTTGGTACTCGATGAAGCTGATCAGATGCTTGCTGTTGGGTTTGAGGAGGATGTGGAAGTCATTTTAGAGAAGCTTCCACCAAAGAGACAGAGCATGCTTTTTTCTGCAACCATGCCTACTTGGGTGAAGAAATTGGCCAGGAAGTATTTGAACAATCCGTTGACAATTGATTTGGTTGGCGATGAAGAAGAAAAGCTCGCTGAAGGGATAAAACTTTATGCTATATCAGCCACTTCCACTTCAAAACGAACAATTCTTTCCGATCTTATTACTGTTTATGCGAAGGGTGGGAAGACTATAGTTTTTACGCAGACAAAAAGAGATGCTGATGAAGTGTCATTAGCATTAACAAATAGTATCACTTCTGAAGCACTGCATGGCGATATATCTCAGCACCAGAGAGAGAGAACATTGAATGGTTTCAGGCAAGGAAAATTTACAGTGCTTGTTGCTACCGATGTTGCATCTCGTGGACTTGATATTCCCAATGTCGATTTGATTATCCATTACGAGCTTCCCAATGATCCCGAGACTTTTGTACATCGTTCTGGTCGTACTGGACGCGCAGGAAAGCTAGGTTCTGCCATTCTGATGTACACAGGTAGCCAGAGAAGAACAGTTAGATCCCTTGAGCGTGATGTAGGATGCAAATTTGAATTTGTTAACGCACCGTCTATGGAAGATGTTTTGGAGGCATCTGCTCAGCAAGTTGTTGCCACACTTAATGTAGTCCATCCCGAGTCTATTGCATTTTTCACCCCAACTGCACAAAAGCTGATTGAAGAAAAAGGAACACCTGCCCTTGCAGCTGCACTGGCACAACTTAGTGGATTCGCCCAACCTCCGTCTTCCAGGTCTCTTATCACCCATGAACAGGGATGGGTTACATTGCAACTAACTCGAGACTCAGAAAATTCTCAAAGATATTTTTCAGCAAGATCAGTCACCGGTTTTCTTTCTGATGTATATTCCAAAGCTGCCGATGAAGTTGGAAAGATACATTTAATTGCAGATGAAAGGGTTCAAGGAGCCGTTTTTGATCTTCCAGAGGACATTGCTAAAGAGTTACTCAATAAGGACATACCAGCTGGAAACACTATTTCCAAAGTCGCCAAGTTACCTCCTTTACAAGATGATGGGCCTGCAAGTGACTTCTATGGGAAGTTTTCCGATAGAGAACGAAGTAACCGAAGAAATCCTAGGGATGGGAGAGGAGGTTTTAGATCTTCACGAGGATGGGATGGAGGCCGAGGCTCTGATGATGAGTTTGGCGACTCATCTAGGAGGGGTGGCAGAAGTTATAATAGATCTGGCAGCAGCTGGTCCAAACCAGAAAGAAGTGGTAGGGATGATTGGCTAATTGGAGGCAGACGAACAAGCAGGTCTCCATCATCATCGGACAGAAGTTTTGGCGGTGCCTGTTTTAATTGTGGGGAGTCTGGGCATAGAGCGTCGGATTGTCCAAACAAGCGAGGCGGCTTTTAA 2229 0.4468 MASVTLIGASSTYKLPPLEQFKKHKPTSSVRFHSFDGNKSRHVSNNLLTHNNSSDRFLPSAVATPNSSSSSLLSDDAFQGIGFDEDDEFPSQTVSADELDISKLNLPSRLVDSLRNRGITELFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIINGLNDDGDSGSYRRLPRALVLAPTRELAKQVEKEIKESAPYLKTVCVYGGVSYVTQQSALSRGVDVVVGTPGRLIDLINGNTLKLSEVEYLVLDEADQMLAVGFEEDVEVILEKLPPKRQSMLFSATMPTWVKKLARKYLNNPLTIDLVGDEEEKLAEGIKLYAISATSTSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTNSITSEALHGDISQHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKLGSAILMYTGSQRRTVRSLERDVGCKFEFVNAPSMEDVLEASAQQVVATLNVVHPESIAFFTPTAQKLIEEKGTPALAAALAQLSGFAQPPSSRSLITHEQGWVTLQLTRDSENSQRYFSARSVTGFLSDVYSKAADEVGKIHLIADERVQGAVFDLPEDIAKELLNKDIPAGNTISKVAKLPPLQDDGPASDFYGKFSDRERSNRRNPRDGRGGFRSSRGWDGGRGSDDEFGDSSRRGGRSYNRSGSSWSKPERSGRDDWLIGGRRTSRSPSSSDRSFGGACFNCGESGHRASDCPNKRGGF 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02873 742 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 174 459 IPR027417 -
Car03g02873 742 Gene3D - 100 308 IPR027417 -
Car03g02873 742 CDD SF2_C_DEAD 318 447 - -
Car03g02873 742 MobiDBLite consensus disorder prediction 633 677 - -
Car03g02873 742 Pfam GUCT (NUC152) domain 525 625 IPR012562 GO:0003723|GO:0004386|GO:0005524
Car03g02873 742 ProSiteProfiles Zinc finger CCHC-type profile. 722 737 IPR001878 GO:0003676|GO:0008270
Car03g02873 742 Pfam DEAD/DEAH box helicase 123 293 IPR011545 GO:0003676|GO:0005524
Car03g02873 742 PANTHER - 83 733 - -
Car03g02873 742 Gene3D - 319 511 IPR027417 -
Car03g02873 742 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 333 479 IPR001650 -
Car03g02873 742 CDD GUCT_Hera 532 612 - -
Car03g02873 742 SMART ultradead3 118 321 IPR014001 -
Car03g02873 742 Gene3D - 708 741 - -
Car03g02873 742 SMART c2hcfinal6 721 737 IPR001878 GO:0003676|GO:0008270
Car03g02873 742 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 83 733 - -
Car03g02873 742 Pfam Zinc knuckle 721 737 IPR001878 GO:0003676|GO:0008270
Car03g02873 742 Pfam Helicase conserved C-terminal domain 330 438 IPR001650 -
Car03g02873 742 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 130 304 IPR014001 -
Car03g02873 742 MobiDBLite consensus disorder prediction 619 742 - -
Car03g02873 742 CDD DEADc 110 305 - -
Car03g02873 742 SMART helicmild6 358 438 IPR001650 -
Car03g02873 742 SUPERFAMILY Retrovirus zinc finger-like domains 703 740 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02873 Car-Chr3 74058349 74063489 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02873 125 460 Eukaryotic Initiation Factors Gene Family AT1G72730 37.941 5.63e-63 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02873 - K16911 gmx:100789516 1053.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02873 03 74058349 74063489 Car03g02873 03 74058349 74063489 ECH
Car03g02873 03 74058349 74063489 Car04g00657 04 6507355 6512396 PCT