Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02862 ATGGGAAGACACTCTTGTTGCTACAAACAAAAGCTTAGGAAGGGTCTATGGTCACCTGAGGAAGATGAAAAACTTTTGAAACATATTACTCAATTTGGTCATGGATGTTGGAGTTCAGTTCCTAAGCAAGCAGGTCTTCAAAGATGTGGTAAGAGTTGTAGGCTTAGGTGGATTAATTATTTAAGGCCTGATTTAAAAAGAGGTACATTTTCACAAGAAGAAGAAAATCTCATCATTGAACTTCATTCAGTACTAGGGAATAGATGGTCGCAAATTGCAGCACAATTGCCTGGAAGAACAGATAATGAAATAAAGAATCTTTGGAATTCTTGTTTAAAGAAGAAACTTAGACAAAAGGGTATAGATCCTTTAACTCATAAACCAATTTCTGAGGCTGAGAATGGAGATGAAGAGAAAGTAGGAGAAGTTTCAGATGAATTGAACCTTGTGAGATCAGAAAGTTTCAAATCAGATGCAGGTTCCTATGAGCAAAAACAGTCTTCAATTATTCTAAAAGGATATCCAAATGAGATGGAATTGGAAGGTAAAAGCAAAAGTGATAGTAACATGTTAACCAATAATAAAGACTTGGCTTATGAAAGGTTTATGACATCTCAACAAGAGAGTTACACTAATAATAATTGCCAACACATTGATTTGATGGGAAATTACTCAATTCAGATGAATAATCTTCCAACAAATTCAAACTCTTCTCATTGGTTTAACCAAACAGGAAAAGTACCCTTTGACATGAACTCTGAATTTACTTCTAATAGTAACATCATGTCTATTCTTCCACCAACTACTAGTTCTTTTTGCTATAAACCATCAGAAGATGTTTCTATTTCTTCAGGCTCTTTTCATGTGAATAATAATAATGGATCCAATTATTGGGAGGAAGAAGAAGTTAAGTGGTGTGAGTATCTTCACAATCCAATGTTGATGCTACAAAATCAAGCACCTGAATCTTTATGCAACCAGATAAAGCCTGCCACAAATTTTGTCCCTTGA 1011 0.3462 MGRHSCCYKQKLRKGLWSPEEDEKLLKHITQFGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQEEENLIIELHSVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQKGIDPLTHKPISEAENGDEEKVGEVSDELNLVRSESFKSDAGSYEQKQSSIILKGYPNEMELEGKSKSDSNMLTNNKDLAYERFMTSQQESYTNNNCQHIDLMGNYSIQMNNLPTNSNSSHWFNQTGKVPFDMNSEFTSNSNIMSILPPTTSSFCYKPSEDVSISSGSFHVNNNNGSNYWEEEEVKWCEYLHNPMLMLQNQAPESLCNQIKPATNFVP 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02862 336 SMART sant 66 114 IPR001005 -
Car03g02862 336 SMART sant 13 63 IPR001005 -
Car03g02862 336 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Car03g02862 336 CDD SANT 17 61 IPR001005 -
Car03g02862 336 Gene3D - 69 142 - -
Car03g02862 336 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Car03g02862 336 PANTHER HOMEODOMAIN-RELATED 1 299 - -
Car03g02862 336 PANTHER MYB DOMAIN PROTEIN 55 1 299 - -
Car03g02862 336 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Car03g02862 336 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Car03g02862 336 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Car03g02862 336 CDD SANT 69 109 IPR001005 -
Car03g02862 336 Gene3D - 11 67 - -
Car03g02862 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Car03g02862 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02862 Car-Chr3 73953546 73955317 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02862 1 143 MYB Transcription Factor Family AT4G01680 85.315 7.97e-91 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car03g02862 Myb_DNA-binding 5.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02862 K09422 - gmx:100037467 458.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02862 03 73953546 73955317 Car04g00671 04 6604384 6606384 PCT