Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02860 ATGACAACAAACTCTTCTCATCTAGCCTCACTAAATGACAAGGATTTCCTTGAACTAGTATGGGAAAATGGTCAAATTCTTGGAGCAAAAGTTACATCATCAAATAGAACAACAACACAAAACACACCTTTGTGCATAGGGTATTCAACAAACCCTTCAAATAACAAGGAAGATGTGATCATCAATAACACTACAAAAAGAAGAACAAACTCAAACTCATCACTTTTGAATCATTTCTCAGCTCAAAACCTCAGCTCATCACACATTGATTTTCAATCCTCTCAAAGCAAGACTTTTCATAAACCAAATGAAAAATTCCAACAACCTCACATGTATTCAACTCCACTCAAGAAACAAAGATTGGATTATTCAAACTCAAAGAAACAAAACTTGGGGTGTGATCAAAGAACAGGAATAGTTAACTTCTCCAACTTTTCTATACCAGCAATGTTTCTCAAATCAAATAATCACCAAAACAGTACAAGAATTAATGTATCAAAAGAAGTAGTAATTGAATCAGCTAAAGATTCATCACAACAACATGGTGTAAGAAAATTTCAACAACAAAAGACTTTAACTTTAACAGCTGCTAACAAATTATCAAACCATGATGAACACTCTGAAACTGCAGCGAGTCATAAAAGTACACTTGATGATCAATATAATAACAACCAAATCCAGAAATCAGAAGCACTTAAAGGAAAGAGAAAAGCTTGTGGTATTGAACAACCATCTTCTGTATGTTCACTTGAAGCCTCAAATGATCCAAACTTTAGTTTCAAAAGACATGATGAGGACACAGTCGACACCAATGATTCACCATATTTAAGTGATGATGATGAAGAAACACCAGAAAATATGATAAAGGAAAAACTagctcgtgaaggcaaaagaagcttcaagaattcggaaattcataattcatctgaaagGAAGAGAAGAGATAAAATCAATAAGAAGATACGCACATTAAAAGAGCTCATACCCAATTGCCATAAGACGGACAAAGCTTCCATGCTTGACGATGCAATCGAATATCTTAAGACGCTCCAGCTCCAATTACAGATAATGTCAATGGGAAGAGGAATTTGTATGCCAATGAATCATCatatgaatatgaatatgaatatgaatGCACAACATTTAATAGGTTTTATGCCACCACAAGTACAGTTTCCTATTCCACAACAAATGAGCGGTAGTGGTAATAGTGTCACAGATAACATCAACAACATAGTTCAGATGTTTGGTTTTTCCAACCAATTACCACCACCAccattgccattgccaatgtcaattcccaatgcACCTTTTCTTCCTATCATTGGAAACTCTAATTCCACCACAACAAACTCTACTTTTGGCAACAAGAATCAACCTGCAGACAGGACGTGTGGCTTATTCTGA 1407 0.3241 MTTNSSHLASLNDKDFLELVWENGQILGAKVTSSNRTTTQNTPLCIGYSTNPSNNKEDVIINNTTKRRTNSNSSLLNHFSAQNLSSSHIDFQSSQSKTFHKPNEKFQQPHMYSTPLKKQRLDYSNSKKQNLGCDQRTGIVNFSNFSIPAMFLKSNNHQNSTRINVSKEVVIESAKDSSQQHGVRKFQQQKTLTLTAANKLSNHDEHSETAASHKSTLDDQYNNNQIQKSEALKGKRKACGIEQPSSVCSLEASNDPNFSFKRHDEDTVDTNDSPYLSDDDEETPENMIKEKLAREGKRSFKNSEIHNSSERKRRDKINKKIRTLKELIPNCHKTDKASMLDDAIEYLKTLQLQLQIMSMGRGICMPMNHHMNMNMNMNAQHLIGFMPPQVQFPIPQQMSGSGNSVTDNINNIVQMFGFSNQLPPPPLPLPMSIPNAPFLPIIGNSNSTTTNSTFGNKNQPADRTCGLF 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02860 468 Gene3D - 297 359 IPR036638 GO:0046983
Car03g02860 468 MobiDBLite consensus disorder prediction 91 111 - -
Car03g02860 468 MobiDBLite consensus disorder prediction 282 318 - -
Car03g02860 468 MobiDBLite consensus disorder prediction 198 222 - -
Car03g02860 468 Pfam Helix-loop-helix DNA-binding domain 306 351 IPR011598 GO:0046983
Car03g02860 468 MobiDBLite consensus disorder prediction 448 468 - -
Car03g02860 468 SMART finulus 307 356 IPR011598 GO:0046983
Car03g02860 468 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 305 373 IPR036638 GO:0046983
Car03g02860 468 PANTHER TRANSCRIPTION FACTOR PIF3 1 452 IPR044273 GO:0003700|GO:0006355
Car03g02860 468 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 1 452 - -
Car03g02860 468 CDD bHLH_AtPIF_like 301 363 - -
Car03g02860 468 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 301 350 IPR011598 GO:0046983
Car03g02860 468 MobiDBLite consensus disorder prediction 248 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02860 Car-Chr3 73945337 73947576 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02860 139 366 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 37.768 2.13e-29 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car03g02860 HLH 2.8e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02860 K12126 - gmx:100784724 271.937