Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02857 ATGGAGAATTGCAACCGTGAATTGTCCTTTTTAACCTCCAACGAATTCCTTCGTAACAACACGGATCCTCCTCCAATCAAAGAAATGGATTTCTTCTCTTCACCATCTAACACCATCATCAAACAAAGGTCACCAACAGTACTCCTTCCTCCTCACTCTGTTAACACTGGGCTGAATTTAAAGTGTGCAAGTGCTGAAGTTTCAAAAGAAGAGAATCCTGAAACTGAGCTGAGTAGAGTTGAAAAAGAATTGAGGAGGGTGCAAGAAGAGAATCAGAAATTGAGAGTTGTGTTGGAACAGATCACCAAAAGCTATAGTCAACTACAAGCTCAGCTCTTCATCGCTATGCACAAACAAAACCCTCATCAGAATATGGCAGACATAAAAATAGACGTGAATGATGCATCGGTTTCGGATGAAAAGCAGGCTTGTTCTAATCATCATCCTGCAAAAGAAGAGGTTAGTGAACGGTCTTCCTCAAACACAATATCCAAGTTAGAAGAACACTCCAAAACTTCCGATCAAGAACCTCCTTTCAGAAAAGCCAGGGTTTCCGTACGTGCACGATCAGAAGCTCCAATGATTAGCGATGGATGTCAATGGAGGAAGTATGGACAAAAAATGGCCAAGGGTAACCCTTGTCCCCGTGCCTACTATCGTTGCACTATGGCTGTTGGTTGTCCAGTTCGCAAGCAGGTACAAAGATGTGCAGAAGACAAGACAGTACTGATAACAACATACGAAGGGAAGCACAACCATCCACTCCCACCAGCAGCAACAGCCATGGCAAATACCACATCAGCAGCTGCAGCAATGCTACTATCAGGTTCAACACTAACCAAGGAATATTCTACACTACCCTATTTATCTTCATTTATTCCCTATCCTACAATGCCAACCCTATCACCTTCTCAACCATTCCCAACTATCACCCTCGACTTAACACACCAAAATATACTTCCTCTGCCATTACAAGGGCACCCTTTGTTCTTCTCACATAAGCTACCACCACCTATGGCTTTGCCACCTTCTTCTTTGGTCGATAATGTGAGTGCAGCCATTTCTTCTGATCCTAATTTTACTGCAGCTTTGACAGCGGCGATATCTTCAATCATTAATGGACCACAAAGAGGAAGTGTGCTTCCAGGTTCACCTCAGCTTCATTCACAGTCATGCACTACATACTCTACCAATTAG 1197 0.4319 MENCNRELSFLTSNEFLRNNTDPPPIKEMDFFSSPSNTIIKQRSPTVLLPPHSVNTGLNLKCASAEVSKEENPETELSRVEKELRRVQEENQKLRVVLEQITKSYSQLQAQLFIAMHKQNPHQNMADIKIDVNDASVSDEKQACSNHHPAKEEVSERSSSNTISKLEEHSKTSDQEPPFRKARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDKTVLITTYEGKHNHPLPPAATAMANTTSAAAAMLLSGSTLTKEYSTLPYLSSFIPYPTMPTLSPSQPFPTITLDLTHQNILPLPLQGHPLFFSHKLPPPMALPPSSLVDNVSAAISSDPNFTAALTAAISSIINGPQRGSVLPGSPQLHSQSCTTYSTN 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02857 398 SMART WRKY_cls 195 255 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car03g02857 398 MobiDBLite consensus disorder prediction 379 398 - -
Car03g02857 398 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 22 151 IPR044810 GO:0003700
Car03g02857 398 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 139 377 IPR044810 GO:0003700
Car03g02857 398 MobiDBLite consensus disorder prediction 162 187 - -
Car03g02857 398 Gene3D WRKY domain 180 257 IPR036576 GO:0003700|GO:0006355|GO:0043565
Car03g02857 398 Coils Coil 70 111 - -
Car03g02857 398 Pfam WRKY DNA -binding domain 197 254 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car03g02857 398 MobiDBLite consensus disorder prediction 139 187 - -
Car03g02857 398 ProSiteProfiles WRKY domain profile. 190 256 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car03g02857 398 PANTHER WRKY TRANSCRIPTION FACTOR 47-RELATED 22 151 - -
Car03g02857 398 PANTHER WRKY TRANSCRIPTION FACTOR 47-RELATED 139 377 - -
Car03g02857 398 SUPERFAMILY WRKY DNA-binding domain 188 256 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02857 Car-Chr3 73917659 73921471 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02857 6 398 WRKY Transcription Factor Family AT4G01720 40.373 4.55e-84 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Car03g02857 WRKY 4.8e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02857 - - mtr:MTR_7g110720 419.083