Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02829 ATGAAAGCGCCCTCTTTTTGTCATCCCTACAGCTTTCCAGATTATCTGGAGGAGATTCACAAAGACCATAGGGTCAATTTCGCCGGAGGAGACCCAACTAACTCTCATCTCCACCACAATGGCAACACTACCGCCATCGATTCTGGATATAATAATAACTATTCCATCCCTCCTCCTCGTAAACGACCCTGGGGAACCTCTCCAGATCAAGTGGATGTCCCGGGCCATGTTAAAGTCTACGTTGCACCAGTTCCCAGAACAGCAACTGAAGCTGATGTCCGCCTTGTGTTTGAAGGCCATGGAAATATTGTTGAGGTTGTTCTTTTAAGGGATAAGTTAACTGGAGCTCGACAAGGGAGTTGTTTCGTGAAATATTCAACATTTAATGAAGCTGACACGGCTATTAAGGCTTTAAGCAATCAGTATACATTTCCTGGAGAATCATATCCTGTTGTTGTCAGATTTGCTGATCGAGAACTTGAGCGTTTTGGGGTTCGAGGCTTCTCCCGAAACTTGGAAAAGAAAGAAGTGGTGGTGGATAAAGTTTTTGTTTGTTACATCAACAAAGACGCTTCAAGACAGGAAATTGAAGAAATATTTTCCCCTTACGGGCATGTAGAACATATCTTCATCATGCGGAATCGTGGATGTTGTTTCGTCAAATTTTCTAATAAAGAGATGGCTTTGGCAGCAATCAAAGGGTTGGATAGAAACTTCACAATGAGAGGTTGTGATCATCCATTAATTGTTCGTTTTGCGGATCCTAAGAAACCAAGGACGGGAGAATCAAGGGGCAACTACTTACCTGCGAATGTGAATTATGGTCCAAATTCTCAAGAACCAGCAGCTTGGCCGCCACCTAATTTTTGTGATTCCAATACTGGAGGGGTGCATATTGCTCCACATCATTCTAGACTTCCACACCAGCAAGTTATTGCTCCTATGCCAAACTGGGAACCTGGTGCTACTGTTGTACAGCAACAATTTCTTCCCCAACAAGTGAATTCACAATTTGCTTCAATGCATTTGCGGTCAATTCGAGCTCCCAACTTGTCTTCTCCACCTTTTCTTGCTGACGTGCAGAGACAATTTCATCCAGCTGATTCATCTGTCCAAAATATAGAGCAGCAACTAAATTTTCAGCTGCCTACTCAGTCCGAACGTAACTCTAATACAGTTGCTGGCAGTACCTCACCTGATCTGCCTACAAATCCCCAAGATGAAGAATTTCCAGAGTGTGATTGGAGTGAACACTACAGTCCTGATGGTCACAAGTACTACTACAACTGCGTCACTTGTGAAAGCAGATGGGAAAAGCCTGAGGAGTATGCTTTGTATGACAAAGAGTCACAGAAGCAACATGAACAAGATGATCATAGCGTTCTTCACTCACAATCGTCGTTATCTTCCTCTCAAGAAGTTTCTCAAAAGCAACAGGAAACAAATCATGATCACATGCAGTCAGAAACAAGTCCTGTTGTTGGACAGGTGTGA 1494 0.4324 MKAPSFCHPYSFPDYLEEIHKDHRVNFAGGDPTNSHLHHNGNTTAIDSGYNNNYSIPPPRKRPWGTSPDQVDVPGHVKVYVAPVPRTATEADVRLVFEGHGNIVEVVLLRDKLTGARQGSCFVKYSTFNEADTAIKALSNQYTFPGESYPVVVRFADRELERFGVRGFSRNLEKKEVVVDKVFVCYINKDASRQEIEEIFSPYGHVEHIFIMRNRGCCFVKFSNKEMALAAIKGLDRNFTMRGCDHPLIVRFADPKKPRTGESRGNYLPANVNYGPNSQEPAAWPPPNFCDSNTGGVHIAPHHSRLPHQQVIAPMPNWEPGATVVQQQFLPQQVNSQFASMHLRSIRAPNLSSPPFLADVQRQFHPADSSVQNIEQQLNFQLPTQSERNSNTVAGSTSPDLPTNPQDEEFPECDWSEHYSPDGHKYYYNCVTCESRWEKPEEYALYDKESQKQHEQDDHSVLHSQSSLSSSQEVSQKQQETNHDHMQSETSPVVGQV 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02829 497 Pfam WW domain 413 440 IPR001202 GO:0005515
Car03g02829 497 Gene3D - 169 262 IPR012677 -
Car03g02829 497 PANTHER RNA BINDING PROTEIN 386 479 - -
Car03g02829 497 MobiDBLite consensus disorder prediction 33 55 - -
Car03g02829 497 MobiDBLite consensus disorder prediction 28 69 - -
Car03g02829 497 PANTHER RNA BINDING PROTEIN 65 392 - -
Car03g02829 497 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 77 158 IPR000504 GO:0003723
Car03g02829 497 ProSiteProfiles WW/rsp5/WWP domain profile. 415 442 IPR001202 GO:0005515
Car03g02829 497 SUPERFAMILY RNA-binding domain, RBD 52 167 IPR035979 GO:0003676
Car03g02829 497 SMART rrm1_1 78 154 IPR000504 GO:0003723
Car03g02829 497 SMART rrm1_1 181 251 IPR000504 GO:0003723
Car03g02829 497 Gene3D - 398 461 - -
Car03g02829 497 SMART ww_5 410 442 IPR001202 GO:0005515
Car03g02829 497 PANTHER FLOWERING TIME CONTROL PROTEIN FCA 65 392 - -
Car03g02829 497 SUPERFAMILY RNA-binding domain, RBD 181 275 IPR035979 GO:0003676
Car03g02829 497 PANTHER FLOWERING TIME CONTROL PROTEIN FCA 386 479 - -
Car03g02829 497 MobiDBLite consensus disorder prediction 448 497 - -
Car03g02829 497 Gene3D - 69 162 IPR012677 -
Car03g02829 497 SUPERFAMILY WW domain 414 445 IPR036020 GO:0005515
Car03g02829 497 CDD WW 413 442 IPR001202 GO:0005515
Car03g02829 497 MobiDBLite consensus disorder prediction 384 404 - -
Car03g02829 497 MobiDBLite consensus disorder prediction 384 415 - -
Car03g02829 497 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 180 255 IPR000504 GO:0003723
Car03g02829 497 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 182 240 IPR000504 GO:0003723
Car03g02829 497 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 79 146 IPR000504 GO:0003723
Car03g02829 497 ProSitePatterns WW/rsp5/WWP domain signature. 415 440 IPR001202 GO:0005515
Car03g02829 497 MobiDBLite consensus disorder prediction 462 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02829 Car-Chr3 73669114 73677669 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02829 73 331 Eukaryotic Initiation Factors Gene Family AT1G71770 26.667 4.66e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02829 K13207 - gmx:100776162 642.114