Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02823 ATGTCAAAGAGAAAGTTCGGATTCGAAGGTTTCGGCATAAACCGCCAATCAACGTACAGTTTCGAGCGATCTCAACCTCCTCAACGACTCTATGTCCCTCCTTCTTCCCGCAAAggccacgacaactacgaagacaccgacatcgacaacatcgagtacgatgacgataccagagatgaagctaacaacaataacgacggtgatggtggtggtgctgataaggaagaggaaatCGATCCTTTAGATGCTTTCATGGAAGGGATACACGAGGAGATGAAGGCGGCACCACCTCCGAAGCCGAAGGAGAAAGCAGAGGATAGGTACAGAGATGATGAAGAGGACGATCCAATGGAGAGTTTTTTGAGAGCGAAAAAGGATTTAGGGTTGACGCTTGCATCGGAAGCGCTGCATGCTGGATACGATTCTGATGAGGAGGTTTATGCTGCTGCTAAGGCTGTGGATGCTGGTTTGATAGAGTATGATTCCGATGATAACCCTATTGTTCTTGATAAGAAGAAAATTGAACCCATAACTCCTCTTGATCACACTTCCATTGATTATGAGCCTTTCAATAAGGATTTTTATGAGGAGACGCCTTCAATATCAGGTATGAGCGAGCAAGATGTAATTGATTACAGGAAGAGTTTGGCAATCCGAGTATCTGGTTTTGATGTTCCTAAGCCAGTTAAAACATTTGAAGAATGTGGGTTTGCTCCACAAATTATGGCTGCTATAAAGAAACAAGGTTATGAGAAACCCACTTCTATACAATGCCAAGCTTTACCGGTTGTGCTTTCTGGAAGAGATATCATTGGCATAGCCAAAACTGGTTCTGGTAAAACTGCTGCTTTTGTGCTTCCTATGATTGTGCATATCATGGATCAGCCAGAGCTTCAGAAGGAGGAAGGTCCTATTGGAGTGATATGTGCGCCTACTAGAGAATTGGCACATCAGATATATCTCGAGGCTAAGAAATTTGCAAAAGCATACGGTATACGTGTCTCTGCTGTCTATGGTGGAATGTCAAAACTTGAACAATTCAAAGAACTTAAGGCAGGCTGTGAGATTGTCGTTGCTACCCCTGGGAGATTAATAGACATGCTAAAAATGAAGGCATTGACAATGTTGAGAGCAACTTACCTAGTGCTTGATGAGGCTGATCGAATGTTTGATCTTGGATTTGAGCCACAAGTAAGGTCCATTGTTGGTCAGATTAGGCCGGACCGCCAAACTTTGCTATTTTCTGCAACAATGCCTCGCAAAGTCGAAAAGTTAGCCAGGGAAATCCTTTCAGATCCTGTCAGGGTGACAGTGGGGGAGGTGGGGATGGCAAATGAAGATATTACTCAAGTTGTTCAAGTAATTCCTTCTGATTCTGAGAAACTGCCGTGGCTTCTGGAGAAACTGCCCGAAACGATTGATCAAGGCGATACGTTAGTTTTTGCTTCCAAAAAGGCCACTGTGGATGAAATTGAATCACAGTTGGCTCAGAGAAGCTTTAAAGTTGCTGCCCTGCACGGTGATAAGGATCAAGCTTCTCGTATGGATATTTTACAGAAGTTTAAATCTGGCACCTACCATGTGCTAATTGCAACTGACGTTGCTGCTCGTGGTCTTGACATCAAGTCAATTAAAACCGTGGTAAACTTTGATATTGCTAAAGATATGGACATGCATGTCCATCGCATTGGAAGAACAGGCCGTGCTGGTGACAAGGAAGGAGTTGCATACACTCTTATAACTCAAAAAGAAGCACGGTTTGCTGGCGAATTGGTAAATAGCTTAGTTGCTGCTGGTCAGAATGTGTCCACGGAGTTGATGGATCTTGCTATGAAGGATGGGAGATTCAGGTCGAAACGCGATGCAAGAAAAGGAGGTGGAAGAAAAGGCAAAGGCAGAGGTGGTGGTGGTGCAGGTGGCAAAGGCGTGCGAGGAGTGGATTTCGGCTTGGGCATTGGATATACTGCAGAGCCAAACAATGCACCATCTAACACAGTTCCAAGTCGATCTGCTGCTGTAAATTCTCTGCGAACAGGAATGATGTCACAATTTAGGAGTAACTTTGTTGCTGCATCATCAAACTCTCAAAATGAAGGATTCAGTAATAATACAAGCATAACTGTTAATAAGAGACCAGCACTCGCTGGCTTTGTATCTGGTGGGTCAATTGGCGGCGATATAAATACTCATCAGCATACTGCTTCATACAATCCTGCTACATCAGCTGCAAATTCCACTAGTCAAAGTTCCGGAGTAAATCCTGGTCAGAACAGCACAAACAGCAGTTCTAAACCTAGAGAAAGGAGAAGGCCATCAGGTTGGGATAGATAG 2331 0.417 MSKRKFGFEGFGINRQSTYSFERSQPPQRLYVPPSSRKGHDNYEDTDIDNIEYDDDTRDEANNNNDGDGGGADKEEEIDPLDAFMEGIHEEMKAAPPPKPKEKAEDRYRDDEEDDPMESFLRAKKDLGLTLASEALHAGYDSDEEVYAAAKAVDAGLIEYDSDDNPIVLDKKKIEPITPLDHTSIDYEPFNKDFYEETPSISGMSEQDVIDYRKSLAIRVSGFDVPKPVKTFEECGFAPQIMAAIKKQGYEKPTSIQCQALPVVLSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLEAKKFAKAYGIRVSAVYGGMSKLEQFKELKAGCEIVVATPGRLIDMLKMKALTMLRATYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVQVIPSDSEKLPWLLEKLPETIDQGDTLVFASKKATVDEIESQLAQRSFKVAALHGDKDQASRMDILQKFKSGTYHVLIATDVAARGLDIKSIKTVVNFDIAKDMDMHVHRIGRTGRAGDKEGVAYTLITQKEARFAGELVNSLVAAGQNVSTELMDLAMKDGRFRSKRDARKGGGRKGKGRGGGGAGGKGVRGVDFGLGIGYTAEPNNAPSNTVPSRSAAVNSLRTGMMSQFRSNFVAASSNSQNEGFSNNTSITVNKRPALAGFVSGGSIGGDINTHQHTASYNPATSAANSTSQSSGVNPGQNSTNSSSKPRERRRPSGWDR 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02823 776 Gene3D - 193 437 IPR027417 -
Car03g02823 776 Pfam DEAD/DEAH box helicase 254 425 IPR011545 GO:0003676|GO:0005524
Car03g02823 776 CDD SF2_C_DEAD 448 580 - -
Car03g02823 776 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 379 610 IPR027417 -
Car03g02823 776 MobiDBLite consensus disorder prediction 729 776 - -
Car03g02823 776 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 212 439 IPR027417 -
Car03g02823 776 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 461 610 IPR001650 -
Car03g02823 776 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 382 390 IPR000629 -
Car03g02823 776 MobiDBLite consensus disorder prediction 13 31 - -
Car03g02823 776 MobiDBLite consensus disorder prediction 1 115 - -
Car03g02823 776 MobiDBLite consensus disorder prediction 729 762 - -
Car03g02823 776 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 261 436 IPR014001 -
Car03g02823 776 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 45 659 - -
Car03g02823 776 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 230 258 IPR014014 GO:0003724
Car03g02823 776 CDD DEADc_DDX42 241 437 - -
Car03g02823 776 SMART ultradead3 249 451 IPR014001 -
Car03g02823 776 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 24 45 659 - -
Car03g02823 776 MobiDBLite consensus disorder prediction 57 115 - -
Car03g02823 776 MobiDBLite consensus disorder prediction 614 642 - -
Car03g02823 776 Gene3D - 438 614 IPR027417 -
Car03g02823 776 Pfam Helicase conserved C-terminal domain 463 570 IPR001650 -
Car03g02823 776 SMART helicmild6 489 570 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02823 Car-Chr3 73614641 73619430 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02823 230 586 Eukaryotic Initiation Factors Gene Family AT3G13920 36.111 5.71e-64 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02823 K12835 - gmx:100814854 1287.32