Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02816 ATGGTCTCCAATGCCACAGCCTCTCCCTCTCGACTTCAAGAACAACATGGAGGGGGGGAGAGACATGCTCGACAAACTTTGGTGAAAAAGATAAATCTGGTGAAAGAGCAAATCCAAAATGAACGAGTTGAATCAATTAAAGAAAAGCTTCAAAGGAATGGGAAAAATCTCCAATGTCAGCTATCTAATGCCATGTTAGTAATATCAAGAAATAATAACTCATCTCAAATTGAGGAAAATAATGGTCAAATGCTTTCTTCAAGAATGGATAATCCTTTGTGTAAGTTCAATGGTTACCATCAAGTTTTGAGAGAAGGTGACCATACCAACAATCAAGATACACCATTGGTGAAAAGTATCAAACTCCCATACATCGAAAGGTTACCTCCATATACATTTTGGACACATTTAGCCAGAAATGAAAAAATGACTGAAGATGAATCAGTTGTTAAGAGAAGTAATATATATTACGATCATCATGGAGGTGAAACGGTAATATGCAGTGATAGTGATGAAGAGTTCACGGATGACGAGGAAGATAAATGTGACTTTTCTCAAGGTGAAGACCAACTTATAAGGATGGTGTTTGAGAAGTATGGTTCAACCAATGAAGTATCGAGTATTATTAGAAACATTATTGGGGGTACTAATTCAGAAATTCAGGAACGATATAAATTTATCAAGGAAAATGACCAACATCATGAAGAAGATTATGAAGAAGATGAATCTTTCATTGAGAAGTGTTTGAAGACAAGTTTGAGTGCCGCTTTAGATGATGTTGGCCACTTTTTTTGTCGTCAATGCATGACCTTTGATTGTTCTTTGCACGGTTGTTCTCAAGAATTAGTATATCCTAGTGAAAAGCAACCAGCTTGGACTGAACAAGAAGGTGACGGAAAACCATGTGGTGATCATTGTTACCTTTTGTTAGAGGAGTTTAGTAATCAGAGTACTAAAGCTGAAGATGCCGCAATGGAATGGCAAGTTGAGAACAAAACAACTTTTTCAAATTGGAAACCTTTGGAGAAAGACTTATATAAGAAGGGAATAGAAATGTTTGGGAAAAACAGTTGCCTTATATCTCGAAACTTACTTTCTGGGTggaagacttgcatggaagttgcaacctacatgtctgctgaagtttcaatgcctcaaggatccatagaagaaattggaaaagtggatgCAATGTGCATTGACAATGAGATGCCATCAAGGTCGCTATCCCTACGAAGAAAGGGCAAATCTAAGTTCAAATATACATCAAAATCTGCAGGTCTCCCATTTTCATGGAAAAGAATTAATGATGGAGAAAATCAAATCTATAAGCAGTATACACCATGTGAATGTGAGGGACACTGTGGAAAGCAATGTTCATGTGTTCTTAATGGGTCTTGCTGTGAAAAATATTGTGGATGTTCAAAGCTTTGCCGGAATCGATTTGGAGGGTGTCATTGTATAAAAAGTCAATGTAGAACTCGACATTGTCCGTGCTTTGCAGCTGCGCGAGAATGTGATGCAGATGTATGTCGAAATTGTTGGATTAGCTGTGGTGATGGTTTATTAGGGGAATCGTCTCATCGTGCAGATAGTCAATGTGGAAATATGATGATTCTTTTAGGGAAAAAACAAAGGATTCTTTTGGCAAAGTCTGATGTTGCTGGATGGGGAGCATTCTTAAAGAATCCAGCAAATAAAAATGATTTCCTAGGAGAGTACACTGGTGAACTAATCTCTCAAATTGAAGCCGAGAAGCGTGGAAAATTATATGATCGTGCTGACTTTTCTTTCCTTTTTAACTTGAATGATGAATATGTTCTTGATGCTTATCGCAAAGGAGACAAATTAAAATTTGCAAACCACTCATCAAAACCTAATTGCTATGCAAAGATTATGCTTGTTGCTGGGGACCATCGAGTAGGAATATATGCAAAGGAACGCATTGAAGCTGGTGAAGAGCTTTTCTATGATTATCGCTATGGTCCAAATCAAAAACCACCATGGCTTCTTAAACTTTTAAGTGATGATTCCGACAAAAATGATTCAACAACTTCTCAAGGAAAACCCAAGAAACACCAGTCTCAATAA 2091 0.3568 MVSNATASPSRLQEQHGGGERHARQTLVKKINLVKEQIQNERVESIKEKLQRNGKNLQCQLSNAMLVISRNNNSSQIEENNGQMLSSRMDNPLCKFNGYHQVLREGDHTNNQDTPLVKSIKLPYIERLPPYTFWTHLARNEKMTEDESVVKRSNIYYDHHGGETVICSDSDEEFTDDEEDKCDFSQGEDQLIRMVFEKYGSTNEVSSIIRNIIGGTNSEIQERYKFIKENDQHHEEDYEEDESFIEKCLKTSLSAALDDVGHFFCRQCMTFDCSLHGCSQELVYPSEKQPAWTEQEGDGKPCGDHCYLLLEEFSNQSTKAEDAAMEWQVENKTTFSNWKPLEKDLYKKGIEMFGKNSCLISRNLLSGWKTCMEVATYMSAEVSMPQGSIEEIGKVDAMCIDNEMPSRSLSLRRKGKSKFKYTSKSAGLPFSWKRINDGENQIYKQYTPCECEGHCGKQCSCVLNGSCCEKYCGCSKLCRNRFGGCHCIKSQCRTRHCPCFAAARECDADVCRNCWISCGDGLLGESSHRADSQCGNMMILLGKKQRILLAKSDVAGWGAFLKNPANKNDFLGEYTGELISQIEAEKRGKLYDRADFSFLFNLNDEYVLDAYRKGDKLKFANHSSKPNCYAKIMLVAGDHRVGIYAKERIEAGEELFYDYRYGPNQKPPWLLKLLSDDSDKNDSTTSQGKPKKHQSQ 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02816 696 SMART set_7 545 666 IPR001214 GO:0005515
Car03g02816 696 ProSiteProfiles CXC domain profile. 427 531 IPR026489 -
Car03g02816 696 ProSiteProfiles SET domain profile. 545 660 IPR001214 GO:0005515
Car03g02816 696 MobiDBLite consensus disorder prediction 673 687 - -
Car03g02816 696 Pfam CXC domain 484 515 IPR041355 -
Car03g02816 696 MobiDBLite consensus disorder prediction 1 23 - -
Car03g02816 696 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) 318 694 IPR045318 GO:0006338|GO:0018024
Car03g02816 696 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) 20 322 IPR045318 GO:0006338|GO:0018024
Car03g02816 696 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 696 IPR025778 GO:0031519
Car03g02816 696 Gene3D SET domain 446 662 IPR046341 -
Car03g02816 696 SUPERFAMILY SET domain 419 665 IPR046341 -
Car03g02816 696 CDD SET_EZH 545 661 - -
Car03g02816 696 SMART CXC_2 480 517 IPR033467 -
Car03g02816 696 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 318 694 - -
Car03g02816 696 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 20 322 - -
Car03g02816 696 MobiDBLite consensus disorder prediction 670 696 - -
Car03g02816 696 Coils Coil 33 60 - -
Car03g02816 696 SMART sant 334 384 IPR001005 -
Car03g02816 696 SMART sant 180 230 IPR001005 -
Car03g02816 696 Pfam SET domain 556 659 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02816 Car-Chr3 73570358 73576468 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02816 534 663 C2H2 Transcription Factor Family AT2G23740 29.932 5.47e-12 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Car03g02816 SET 1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02816 - - cam:101494145 1400.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02816 03 73570358 73576468 Car04g00716 04 7020449 7030604 PCT