Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02800 ATGGGAAGGGCTCCTTGTTGTGAGAAAGTGGGTTTGAAGAAGGGGAGATGGACAGCAGAGGAAGATGAAATTTTGACCAAATATGTTAAAGCCAATGGGGAAGGTTCTTGGAGATCATTGCCCAAAAATGCAGGATTACTTAGATGTGGTAAGAGTTGCAGATTGAGATGGATTAACTATTTGAGAGCTGATCTCAAAAGGGGAAATATTTCTGCTGAAGAAGAAAGTATCATTGTCAAGTTGCATGCTTCTTTTGGCAACAGGTGGTCTTTGATAGCAAGTCACTTGCCAGGCAGAACAGACAACGAGATTAAAAACTACTGGAACTCTCACTTAAGCAGAAAAGTTTACAGCTTCCGAGGATCATCAACAACAACAAATTATAATAATACCAAAGAGATTCCCTTGCAACAAGGTATCGTAGTGGACACACCCCCCAAAAGAAAATGTGGTAGAACTAGCCGTTGGGCCATGAAGAAAAACAAACGCTATACCCAAAATGTTTTCGAAAGCCCAAAACTAAAAAGAAGCGAACCTTCAATGGTTACGTTTCCACCCACCCCTGCATTAGAGAGCGAGAAGTTGGGCCTTGAAAATGGGCCATGTTCTAGTAGCGAAGATAGAAACGGCCCAATTGGGTTACATTTACCGTGCTTTGTAGGTAAAAATATTGAAACTGATCGTGACCGCACGTTGGGACCTTATCCGAATGTTATTAATGACAGTGACGTGTTGGATTTTAATGATATCATGGATACATGCAAGGTGGAAGAAAAAAGAGAAAACAATGATGATATGTTGGTGATTAATGAAAGAGTTGGGAACACAACAAAGGACCAAGAGAGTAATAATAATTATAATGCAATGAACAATGGTTTTAATGGGGAGTTAAATTCTTCGGATGATAATTGGGACTGGGAGAGTGTGATGCCTTTGTTGAATCAAAAAGAGCAATCGGTTTCATGGGAGGAGCAAAATGAAAATACATTGACTTGGTTGTGGGATGATGATGAATTGGAAAAGGATTTTCAGAGATTTCGAGAGATTGACCTTCACAAACAAAATGCTATGGTTTCTTGGTTTTTATCTTAA 1092 0.3938 MGRAPCCEKVGLKKGRWTAEEDEILTKYVKANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNISAEEESIIVKLHASFGNRWSLIASHLPGRTDNEIKNYWNSHLSRKVYSFRGSSTTTNYNNTKEIPLQQGIVVDTPPKRKCGRTSRWAMKKNKRYTQNVFESPKLKRSEPSMVTFPPTPALESEKLGLENGPCSSSEDRNGPIGLHLPCFVGKNIETDRDRTLGPYPNVINDSDVLDFNDIMDTCKVEEKRENNDDMLVINERVGNTTKDQESNNNYNAMNNGFNGELNSSDDNWDWESVMPLLNQKEQSVSWEEQNENTLTWLWDDDELEKDFQRFREIDLHKQNAMVSWFLS 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02800 363 CDD SANT 16 61 IPR001005 -
Car03g02800 363 Gene3D - 11 67 - -
Car03g02800 363 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Car03g02800 363 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Car03g02800 363 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Car03g02800 363 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 340 - -
Car03g02800 363 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Car03g02800 363 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Car03g02800 363 CDD SANT 71 112 IPR001005 -
Car03g02800 363 Gene3D - 71 116 - -
Car03g02800 363 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Car03g02800 363 PANTHER MYB TRANSCRIPTION FACTOR 2 340 - -
Car03g02800 363 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Car03g02800 363 MobiDBLite consensus disorder prediction 177 208 - -
Car03g02800 363 SMART sant 13 63 IPR001005 -
Car03g02800 363 SMART sant 66 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02800 Car-Chr3 73428815 73432876 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02800 1 180 MYB Transcription Factor Family AT5G49330 63.492 1.76e-76 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car03g02800 Myb_DNA-binding 4.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02800 K09422 - gmx:100814275 333.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02800 03 73428815 73432876 Car04g00733 04 7216924 7223812 PCT