Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02796 ATGGAAGATTCTGAAGCCAAATCTGCTGAAAACCAGCAAAGTGCACAAGTGTGTAGTTTCTTCCGAAAACCAGTTAATAAGAAGAACATAAGGAAACGCACTGTTGATAACGAAGATAATGAGGATGACTCAAACAGTGAAAGCTCTTTGATGCATGTTCAGAAAAAGACCACGAAGTCCGACAATAAGTTGTTCTTTTCCAGCGGCTCTTCAAAAAGCTTTGCATCTGCCGAACAAAATGAAGAATCTGAGAAACCTGTCTTCCATTTTGAGTCTTCCAAAGAGATTCAAGTTTCACACGATAGCAAAGCAACTGCAACTCTGGAGACTGAAACTGATTTTTCGAAAGATGCTCGTGCCATCCGTGAAAGAGCTCTTAAGCAAGCGTCGGAGAGTCTCAAGGGAAAAACCACTGGATCAGAGGATAAAAAATTATACAAGGGAGTCAATAGTTACACAGACTATAAGGCTGGATTCCGTAGAGAGCAAACAATTGCCAGTGAGAAGGCTGGTGGGTCACATGGTCCTCTTAGGGCTTCCGCTCACATAAGAGTTAGTGCCAGATTTGATTATCAGCCTGATATATGCAAGGATTATAAGGAAACTGGTTACTGTGGGTATGGCGATTCGTGTAAATTTATGCATGATCGAGGTGATTACAAATCTGGTTGGCAGATGGAGAAGGAATGGGATGAAGCTGAGAAAGCAAGGAAGATGAGGTTGGCTGCGGGTGAGGGTGCGGAAGAGGAGGGTACAAATTTGAACGATGATGACAGTGATGATGAGGATTCATTACCATTTGCATGTTTCATTTGTAGAAATCCATTTGTGGATCCTGTGGCAACCAAGTGCAAACACTACTTCTGTGAGCATTGTGCATTGAAGCATCATGCAAAGAATAAGAAGTGTTTTGTCTGCAACCAACCAACACTTGGCATTTTTAATGTTGCTCATGAGATACGAAAGAAGATGGCTGAGGATAAATAA 987 0.4184 MEDSEAKSAENQQSAQVCSFFRKPVNKKNIRKRTVDNEDNEDDSNSESSLMHVQKKTTKSDNKLFFSSGSSKSFASAEQNEESEKPVFHFESSKEIQVSHDSKATATLETETDFSKDARAIRERALKQASESLKGKTTGSEDKKLYKGVNSYTDYKAGFRREQTIASEKAGGSHGPLRASAHIRVSARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQMEKEWDEAEKARKMRLAAGEGAEEEGTNLNDDDSDDEDSLPFACFICRNPFVDPVATKCKHYFCEHCALKHHAKNKKCFVCNQPTLGIFNVAHEIRKKMAEDK 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02796 328 ProSiteProfiles Zinc finger C3H1-type profile. 190 218 IPR000571 GO:0046872
Car03g02796 328 SMART ring_2 269 306 IPR001841 -
Car03g02796 328 SUPERFAMILY RING/U-box 268 311 - -
Car03g02796 328 MobiDBLite consensus disorder prediction 1 20 - -
Car03g02796 328 SUPERFAMILY CCCH zinc finger 189 221 IPR036855 GO:0046872
Car03g02796 328 MobiDBLite consensus disorder prediction 29 108 - -
Car03g02796 328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 267 326 IPR013083 -
Car03g02796 328 CDD RING-HC_RNF113A_B 267 307 - -
Car03g02796 328 MobiDBLite consensus disorder prediction 78 98 - -
Car03g02796 328 PANTHER ZINC FINGER PROTEIN 183 8 327 IPR039971 -
Car03g02796 328 SMART c3hfinal6 190 217 IPR000571 GO:0046872
Car03g02796 328 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 1-LIKE 8 327 - -
Car03g02796 328 MobiDBLite consensus disorder prediction 60 77 - -
Car03g02796 328 ProSiteProfiles Zinc finger RING-type profile. 269 307 IPR001841 -
Car03g02796 328 Gene3D - 188 222 - -
Car03g02796 328 ProSitePatterns Zinc finger RING-type signature. 284 293 IPR017907 -
Car03g02796 328 MobiDBLite consensus disorder prediction 30 59 - -
Car03g02796 328 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 191 216 IPR000571 GO:0046872
Car03g02796 328 Pfam Zinc finger, C3HC4 type (RING finger) 268 310 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02796 8 328 C2H2 Transcription Factor Family AT1G01350 70.093 1.56e-166 465
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Car03g02796 zf-C3HC4_3 1.5e-08 CL0229