Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02775 ATGTCCGAAACAAATGCAGTCTCCGAAACCCCTCAAAACATGACCATCTACATCAACAACCTCAACGAAAAAATCAAGATTGAAGAGTTGAAGAAGTCCTTGCACGCTGTTTTCAGCCAATTTGGGAAGATACTTGAGGTGTTGGCTTTCAAAACTCTGAAACATAAGGGTCAAGCTTGGGTGATTTTTGAGGATGTATCTTCTGCTTCTAATGCACTTAGGCAAATGCAAGGTTTCCCTTTCTACGATAAGCCCATGAGAATACAGTATGCCAGGACTAAATCTGATATAATAGCAAAAGCAGATGGTACTTTTGTTCCTCGGGAAAAACGGAAGAGGCACGATGACAAAGGCAAAAAACGGAAGGACCAACACGATGCTAATTTAGCTGGAATGGGCTTAAATCCTTCTTATCCCGGTGCTTATGGTGCAACACCTGCTCTATCCCAGATACCTTATCCAGGTGGTGCAAAATCCATGGTACCTGAGGCTCCGGCACCTCCCAATAATATTCTCTTTATTCAGAATCTTCCCAATGAAACCACTCCCATGATGCTTCAAATGCTCTTTCTTCAATATCCTGGGTTCAAGGAAGTTAGAATGGTTGAAACGAAGCCAGGAATTGCTTTTGTGGAATATGGAGATGAGATGCAATCCACAGTGGCTATGCAGGCACTGCAAGGTTTCAAGATAACCCCACAAAACCCTATGTTGATAACTTATGCCAAGAAATAG 735 0.4245 MSETNAVSETPQNMTIYINNLNEKIKIEELKKSLHAVFSQFGKILEVLAFKTLKHKGQAWVIFEDVSSASNALRQMQGFPFYDKPMRIQYARTKSDIIAKADGTFVPREKRKRHDDKGKKRKDQHDANLAGMGLNPSYPGAYGATPALSQIPYPGGAKSMVPEAPAPPNNILFIQNLPNETTPMMLQMLFLQYPGFKEVRMVETKPGIAFVEYGDEMQSTVAMQALQGFKITPQNPMLITYAKK 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02775 244 CDD RRM1_U1A_like 15 92 - -
Car03g02775 244 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 7 244 - -
Car03g02775 244 MobiDBLite consensus disorder prediction 105 130 - -
Car03g02775 244 SMART rrm1_1 171 240 IPR000504 GO:0003723
Car03g02775 244 SMART rrm1_1 15 89 IPR000504 GO:0003723
Car03g02775 244 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A 7 244 - -
Car03g02775 244 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 170 244 IPR000504 GO:0003723
Car03g02775 244 SUPERFAMILY RNA-binding domain, RBD 11 231 IPR035979 GO:0003676
Car03g02775 244 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 14 93 IPR000504 GO:0003723
Car03g02775 244 CDD RRM2_U1A_like 168 240 - -
Car03g02775 244 Gene3D - 7 113 IPR012677 -
Car03g02775 244 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 172 231 IPR000504 GO:0003723
Car03g02775 244 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 16 86 IPR000504 GO:0003723
Car03g02775 244 Gene3D - 158 244 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02775 Car-Chr3 73246651 73250683 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02775 3 137 Eukaryotic Initiation Factors Gene Family AT4G34110 26.812 4.85e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02775 K11091 - gmx:100500002 417.542