Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car03g02771 | ATGGCGTCAGGTTGGGGAATCTCTGGAAACAAAGGTCGTTGCTACGATTTCTGGGTCGACTTCAGCGAGTGTATGTCTACCTGCAGAGAACCCAAAGACTGTGTTCTCCTCCGTGAAGATTACTTCGAGTGCCTTCACCATTCCAAAGAGTTCCGACGAAGAAACCGGATTTACAAGGAGGAGCAACGCCAACTAAGAGCTGCTTCCAAGAAAGGTAACAGCGAGGGGGATGGGGGCATACAAAAATTATATTTTTATTCTCAATTCCTTGTTGCTTATGATTATTTTTTATTTAATTTGTTGTTGAAGAAAAAAATGAGTAGACATTCGAGCAGAACTGTCTATGTTGGGAATCTACCTGGCGATATCCGTGAAAGAGAAGTTGAAGATTTGTTTATGAAGTATGGACACATTACTCATATTGACCTAAAGGTGCCACCAAGACCTCCTGGCTATGCATTTGTAGAGTTCGATGATGTTCAAGATGCTGAGGATGCAATTCGTGGGCGCGATGGCTATGATTTTGATGGGCACCGATTACGGGTGGAAGCTGCACATGGCGGTCGTGGTAATTCATCTTCAAGAGATCGATATAGTAGTCACAGCAATGGTCGGGGTGGACGTGGAGTATCCAGACGCTCTGAATATCGTGTTCTAGTCTCTGGATTGCCCTCTTCTGCATCCTGGCAGGATCTTAAGGATCACATGCGAAAAGCAGGGGATGTTTGTTTTTCCCAAGTTTTTCATGACGGCAGAGGTACCACTGGGATTGTGGATTACACAAACTATGATGATATGAAATATGCTATCAAAAAGCTTGATGACTCTGAGTTCCGGAATGCATTTTCCAAGGCTTATGTTCGAGTGAGGGAATATGATTCAAGGCGGGACTCTAGAAGTCCTAGTCGGGGCCCATCTCATTCTAGAGGAAGAagctatagccgcagtcgtagccgtagctacagtccaggccatagccgaagTAAATCTCCAAAGGGTAAATCTTCACAACGATCACCAGCTAAATCACCAGCAAAATCGGTTTCTCGCTCTCGTTCAAGATCAAAGTCCCGTTCTTTATCAGGATATGGAAACTTGCGGCATACTGGAAATTGGAAATTAGGGACTTGGTGGGATTTTGTTCAATTGCCTGCAACTCAATTTGTTGTGGAGGCAATCGGGATTTGGAAATCTCCACCACTGAGCACTAGGGATAATTTCATTACAATTGTTGGCTTCAAGATTTGCCAAGTCAATAGGGCTGTTGGATCAAATTTGATAAGGGAACTTGTGGATTTAAATTCTGTTGTTTGTGGAACTTTTGCAGATCACGATCAAGGTCTAGGTCTCCATTGCCCCTGCGCAATAAAAGCCCCAAAAAGCGCAGTGCTagtaggagtccaagtaggagcaggagcaggagcaagagCTTGTCCAGGTGAGTTCTGA | 1449 | 0.412 | MASGWGISGNKGRCYDFWVDFSECMSTCREPKDCVLLREDYFECLHHSKEFRRRNRIYKEEQRQLRAASKKGNSEGDGGIQKLYFYSQFLVAYDYFLFNLLLKKKMSRHSSRTVYVGNLPGDIREREVEDLFMKYGHITHIDLKVPPRPPGYAFVEFDDVQDAEDAIRGRDGYDFDGHRLRVEAAHGGRGNSSSRDRYSSHSNGRGGRGVSRRSEYRVLVSGLPSSASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSKAYVRVREYDSRRDSRSPSRGPSHSRGRSYSRSRSRSYSPGHSRSKSPKGKSSQRSPAKSPAKSVSRSRSRSKSRSLSGYGNLRHTGNWKLGTWWDFVQLPATQFVVEAIGIWKSPPLSTRDNFITIVGFKICQVNRAVGSNLIRELVDLNSVVCGTFADHDQGLGLHCPCAIKAPKSAVLVGVQVGAGAGARACPGEF | 482 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car03g02771 | 482 | MobiDBLite | consensus disorder prediction | 290 | 304 | - | - | |
| Car03g02771 | 482 | ProSiteProfiles | Coiled coil-helix-coiled coil-helix (CHCH) domain profile. | 11 | 52 | - | - | |
| Car03g02771 | 482 | PANTHER | SERINE/ARGININE RICH SPLICING FACTOR | 108 | 359 | - | - | |
| Car03g02771 | 482 | PANTHER | PRE-MRNA-SPLICING FACTOR SF2-LIKE PROTEIN | 108 | 359 | - | - | |
| Car03g02771 | 482 | Gene3D | - | 102 | 215 | IPR012677 | - | |
| Car03g02771 | 482 | MobiDBLite | consensus disorder prediction | 192 | 207 | - | - | |
| Car03g02771 | 482 | Gene3D | - | 216 | 293 | IPR012677 | - | |
| Car03g02771 | 482 | MobiDBLite | consensus disorder prediction | 305 | 362 | - | - | |
| Car03g02771 | 482 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 114 | 181 | IPR000504 | GO:0003723 | |
| Car03g02771 | 482 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 218 | 280 | IPR000504 | GO:0003723 | |
| Car03g02771 | 482 | CDD | RRM1_SF2_plant_like | 113 | 183 | - | - | |
| Car03g02771 | 482 | Pfam | NADH:ubiquinone oxidoreductase, NDUFS5-15kDa | 12 | 65 | IPR019342 | - | |
| Car03g02771 | 482 | MobiDBLite | consensus disorder prediction | 184 | 213 | - | - | |
| Car03g02771 | 482 | CDD | RRM2_SF2_plant_like | 216 | 291 | - | - | |
| Car03g02771 | 482 | SMART | rrm1_1 | 217 | 288 | IPR000504 | GO:0003723 | |
| Car03g02771 | 482 | SMART | rrm1_1 | 113 | 183 | IPR000504 | GO:0003723 | |
| Car03g02771 | 482 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 112 | 187 | IPR000504 | GO:0003723 | |
| Car03g02771 | 482 | SUPERFAMILY | RNA-binding domain, RBD | 110 | 282 | IPR035979 | GO:0003676 | |
| Car03g02771 | 482 | MobiDBLite | consensus disorder prediction | 290 | 362 | - | - | |
| Car03g02771 | 482 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 216 | 294 | IPR000504 | GO:0003723 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Car03g02771 | Car-Chr3 | 73203934 | 73216367 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Car03g02771 | 107 | 183 | Eukaryotic Initiation Factors Gene Family | AT5G06000 | 35.000 | 1.33e-06 | 48.1 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car03g02771 | K12890 | - | gmx:100789847 | 347.821 |